Analysis of interatomic Contacts of Structural Units in PDB entry:
1NLH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NLH entry

There is 1 chain in PDB entry 1NLH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 0ALA 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 1NLH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 18Right-handed alpha
Helix 2
2
A
37 45Right-handed alpha
Helix 3
3
A
102 112Right-handed alpha
Helix 4
4
A
148 163Right-handed alpha
Helix 5
5
A
192 195Right-handed alpha
Helix 6
6
A
209 216Right-handed alpha
Helix 7
7
A
252 261Right-handed alpha
Helix 8
8
A
314 330Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1NLH. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
115 118parallel
Strand 3
A
91 94parallel
Strand 4
A
2 6parallel
Strand 5
A
26 32parallel
Strand 6
A
69 75parallel
Strand 7
A
63 66anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 310first strand
Strand 2
A
237 244anti-parallel
Strand 3
A
169 175anti-parallel
Strand 4
A
224 230parallel
Strand 5
A
203 205anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 273first strand
Strand 2
A
289 292parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il