Analysis of interatomic Contacts of Structural Units in PDB entry:
1NLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NLM entry

There are 2 chains in PDB entry 1NLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7ALA 356
B
 LYS 7ALA 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1NLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 32Right-handed alpha
Helix 2
2
A
46 51Right-handed alpha
Helix 3
3
A
52 55Right-handed 310
Helix 4
4
A
63 67Right-handed 310
Helix 5
5
A
71 77Right-handed alpha
Helix 6
6
A
78 96Right-handed alpha
Helix 7
7
A
107 118Right-handed alpha
Helix 8
8
A
132 139Right-handed alpha
Helix 9
9
A
140 142Right-handed 310
Helix 10
10
A
164 169Right-handed alpha
Helix 11
11
A
172 177Right-handed alpha
Helix 12
12
A
195 210Right-handed alpha
Helix 13
13
A
223 234Right-handed alpha
Helix 14
14
A
247 255Right-handed alpha
Helix 15
15
A
263 274Right-handed alpha
Helix 16
16
A
287 299Right-handed alpha
Helix 17
17
A
306 310Right-handed 310
Helix 18
18
A
311 321Right-handed alpha
Helix 19
19
A
323 337Right-handed alpha
Helix 20
20
A
341 355Right-handed alpha
Helix 21
21
B
16 32Right-handed alpha
Helix 22
22
B
46 54Right-handed alpha
Helix 23
23
B
63 67Right-handed 310
Helix 24
24
B
70 77Right-handed alpha
Helix 25
25
B
78 80Right-handed 310
Helix 26
26
B
81 96Right-handed alpha
Helix 27
27
B
107 118Right-handed alpha
Helix 28
28
B
132 139Right-handed alpha
Helix 29
29
B
164 169Right-handed alpha
Helix 30
30
B
172 178Right-handed alpha
Helix 31
31
B
195 210Right-handed alpha
Helix 32
32
B
223 235Right-handed alpha
Helix 33
33
B
247 255Right-handed alpha
Helix 34
34
B
263 274Right-handed alpha
Helix 35
35
B
287 299Right-handed alpha
Helix 36
36
B
306 310Right-handed 310
Helix 37
37
B
311 322Right-handed alpha
Helix 38
38
B
323 337Right-handed alpha
Helix 39
39
B
341 355Right-handed alpha
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There are 4 sheets in PDB entry 1NLM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
36 41parallel
Strand 3
A
8 13parallel
Strand 4
A
99 104parallel
Strand 5
A
122 126parallel
Strand 6
A
144 147parallel
Strand 7
A
157 158parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
213 218parallel
Strand 3
A
184 189parallel
Strand 4
A
257 260parallel
Strand 5
A
277 279parallel
Strand 6
A
302 304parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
36 41parallel
Strand 3
B
8 12parallel
Strand 4
B
99 102parallel
Strand 5
B
122 126parallel
Strand 6
B
144 147parallel
Strand 7
B
157 158parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 242first strand
Strand 2
B
213 218parallel
Strand 3
B
184 189parallel
Strand 4
B
257 260parallel
Strand 5
B
277 279parallel
Strand 6
B
302 304parallel
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