Analysis of interatomic Contacts of Structural Units in PDB entry:
1NLU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NLU entry

There is 1 chain in PDB entry 1NLU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3PHE 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 1NLU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 11Right-handed 310
Helix 2
2
A
12 17Right-handed alpha
Helix 3
3
A
38 52Right-handed alpha
Helix 4
4
A
74 92Right-handed alpha
Helix 5
5
A
111 125Right-handed alpha
Helix 6
6
A
138 144Right-handed alpha
Helix 7
7
A
145 160Right-handed alpha
Helix 8
8
A
244 250Right-handed 310
Helix 9
9
A
267 271Right-handed 310
Helix 10
10
A
285 304Right-handed alpha
Helix 11
11
A
311 322Right-handed alpha
Helix 12
12
A
357 369Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 1NLU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
199 208anti-parallel
Strand 3
A
163 167parallel
Strand 4
A
129 132parallel
Strand 5
A
25 35parallel
Strand 6
A
96 104parallel
Strand 7
A
59 63parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
199 208anti-parallel
Strand 3
A
262 265parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
190 191anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 224first strand
Strand 2
A
230 232anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 242first strand
Strand 2
A
256 259anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 276first strand
Strand 2
A
279 283anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
355 356anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il