Analysis of interatomic Contacts of Structural Units in PDB entry:
1NLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NLY entry

There are 2 chains in PDB entry 1NLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6LYS 328
B
 LEU 6LYS 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1NLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 22Right-handed alpha
Helix 2
2
A
24 42Right-handed alpha
Helix 3
3
A
73 76Right-handed 310
Helix 4
4
A
77 92Right-handed alpha
Helix 5
5
A
141 148Right-handed alpha
Helix 6
6
A
156 170Right-handed alpha
Helix 7
7
A
183 191Right-handed alpha
Helix 8
8
A
192 195Right-handed 310
Helix 9
9
A
228 237Right-handed alpha
Helix 10
10
A
251 263Right-handed alpha
Helix 11
11
A
276 291Right-handed alpha
Helix 12
14
B
6 22Right-handed alpha
Helix 13
15
B
24 42Right-handed alpha
Helix 14
16
B
73 76Right-handed 310
Helix 15
17
B
77 92Right-handed alpha
Helix 16
18
B
141 148Right-handed alpha
Helix 17
19
B
156 170Right-handed alpha
Helix 18
20
B
183 191Right-handed alpha
Helix 19
21
B
192 195Right-handed 310
Helix 20
22
B
228 237Right-handed alpha
Helix 21
23
B
251 263Right-handed alpha
Helix 22
24
B
276 291Right-handed alpha
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There are 4 sheets in PDB entry 1NLY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
55 60anti-parallel
Strand 3
A
45 51anti-parallel
Strand 4
A
129 133anti-parallel
Strand 5
A
113 117anti-parallel
Strand 6
A
103 107anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 222first strand
Strand 2
A
201 205parallel
Strand 3
A
243 248parallel
Strand 4
A
267 273parallel
Strand 5
A
174 178parallel
Strand 6
A
312 316parallel
Strand 7
A
322 327anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 69first strand
Strand 2
B
55 60anti-parallel
Strand 3
B
45 51anti-parallel
Strand 4
B
129 133anti-parallel
Strand 5
B
113 117anti-parallel
Strand 6
B
103 107anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 222first strand
Strand 2
B
201 205parallel
Strand 3
B
243 248parallel
Strand 4
B
267 273parallel
Strand 5
B
174 178parallel
Strand 6
B
312 316parallel
Strand 7
B
322 327anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il