Analysis of interatomic Contacts of Structural Units in PDB entry:
1NM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NM3 entry

There are 2 chains in PDB entry 1NM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3TYR 239
B
 SER 3ALA 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 1NM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 32Right-handed alpha
Helix 2
2
A
46 52Right-handed alpha
Helix 3
3
A
52 67Right-handed alpha
Helix 4
4
A
79 90Right-handed alpha
Helix 5
5
A
103 109Right-handed alpha
Helix 6
6
A
154 163Right-handed alpha
Helix 7
7
A
180 194Right-handed alpha
Helix 8
8
A
207 215Right-handed alpha
Helix 9
9
A
232 239Right-handed alpha
Helix 10
10
B
27 32Right-handed alpha
Helix 11
11
B
52 67Right-handed alpha
Helix 12
12
B
79 91Right-handed alpha
Helix 13
13
B
103 109Right-handed alpha
Helix 14
14
B
154 163Right-handed alpha
Helix 15
15
B
180 192Right-handed alpha
Helix 16
16
B
207 216Right-handed alpha
Helix 17
17
B
232 240Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 1NM3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 18first strand
Strand 2
A
21 26anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
71 76parallel
Strand 3
A
35 41parallel
Strand 4
A
127 132anti-parallel
Strand 5
A
135 141anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
122 124anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
172 176parallel
Strand 3
A
222 225anti-parallel
Strand 4
A
228 231anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 18first strand
Strand 2
B
21 26anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
71 76parallel
Strand 3
B
35 41parallel
Strand 4
B
127 132anti-parallel
Strand 5
B
135 141anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
122 124anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
172 176parallel
Strand 3
B
222 225anti-parallel
Strand 4
B
228 231anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il