Analysis of interatomic Contacts of Structural Units in PDB entry:
1NMO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1NMO entry

There are 6 chains in PDB entry 1NMO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	ALA 247
B	MSE 1	ALA 247
C	MSE 1	ALA 247
D	MSE 1	ALA 247
E	MSE 1	ALA 247
F	MSE 1	ALA 247

There are 68 helices in PDB entry 1NMO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	14	Right-handed alpha
Helix 2	2	A	45	55	Right-handed alpha
Helix 3	3	A	77	89	Right-handed alpha
Helix 4	4	A	97	103	Right-handed alpha
Helix 5	5	A	107	117	Right-handed alpha
Helix 6	6	A	138	151	Right-handed alpha
Helix 7	7	A	175	177	Right-handed 310
Helix 8	8	A	178	186	Right-handed alpha
Helix 9	9	A	196	206	Right-handed alpha
Helix 10	10	A	214	219	Right-handed alpha
Helix 11	11	A	220	234	Right-handed alpha
Helix 12	12	B	2	14	Right-handed alpha
Helix 13	13	B	45	55	Right-handed alpha
Helix 14	14	B	77	88	Right-handed alpha
Helix 15	15	B	97	103	Right-handed alpha
Helix 16	16	B	107	117	Right-handed alpha
Helix 17	17	B	139	151	Right-handed alpha
Helix 18	18	B	175	177	Right-handed 310
Helix 19	19	B	178	186	Right-handed alpha
Helix 20	20	B	196	207	Right-handed alpha
Helix 21	21	B	214	219	Right-handed alpha
Helix 22	22	B	220	234	Right-handed alpha
Helix 23	23	C	2	15	Right-handed alpha
Helix 24	24	C	16	19	Right-handed 310
Helix 25	25	C	45	55	Right-handed alpha
Helix 26	26	C	77	89	Right-handed alpha
Helix 27	27	C	97	103	Right-handed alpha
Helix 28	28	C	107	117	Right-handed alpha
Helix 29	29	C	139	151	Right-handed alpha
Helix 30	30	C	175	177	Right-handed 310
Helix 31	31	C	178	186	Right-handed alpha
Helix 32	32	C	196	207	Right-handed alpha
Helix 33	33	C	214	219	Right-handed alpha
Helix 34	34	C	219	234	Right-handed alpha
Helix 35	35	D	2	14	Right-handed alpha
Helix 36	36	D	15	19	Right-handed 310
Helix 37	37	D	45	55	Right-handed alpha
Helix 38	38	D	77	89	Right-handed alpha
Helix 39	39	D	97	103	Right-handed alpha
Helix 40	40	D	107	117	Right-handed alpha
Helix 41	41	D	138	151	Right-handed alpha
Helix 42	42	D	175	177	Right-handed 310
Helix 43	43	D	178	186	Right-handed alpha
Helix 44	44	D	196	206	Right-handed alpha
Helix 45	45	D	216	219	Right-handed 310
Helix 46	46	D	220	234	Right-handed alpha
Helix 47	47	E	2	14	Right-handed alpha
Helix 48	48	E	45	56	Right-handed alpha
Helix 49	49	E	76	89	Right-handed alpha
Helix 50	50	E	97	103	Right-handed alpha
Helix 51	51	E	107	117	Right-handed alpha
Helix 52	52	E	138	151	Right-handed alpha
Helix 53	53	E	175	177	Right-handed 310
Helix 54	54	E	178	186	Right-handed alpha
Helix 55	55	E	196	207	Right-handed alpha
Helix 56	56	E	214	219	Right-handed alpha
Helix 57	57	E	220	234	Right-handed alpha
Helix 58	58	F	2	15	Right-handed alpha
Helix 59	59	F	16	19	Right-handed 310
Helix 60	60	F	45	56	Right-handed alpha
Helix 61	61	F	76	89	Right-handed alpha
Helix 62	62	F	97	103	Right-handed alpha
Helix 63	63	F	107	116	Right-handed alpha
Helix 64	64	F	138	151	Right-handed alpha
Helix 65	65	F	175	177	Right-handed 310
Helix 66	66	F	178	186	Right-handed alpha
Helix 67	67	F	196	206	Right-handed alpha
Helix 68	68	F	220	234	Right-handed alpha

There are 12 sheets in PDB entry 1NMO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	92	95	anti-parallel
Strand 3	A	59	64	parallel
Strand 4	A	37	43	parallel
Strand 5	A	237	240	parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	125	first strand
Strand 2	A	128	137	anti-parallel
Strand 3	A	165	170	anti-parallel
Strand 4	A	189	192	parallel
Strand 5	A	209	212	parallel
Strand 6	A	155	157	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	92	95	anti-parallel
Strand 3	B	59	62	parallel
Strand 4	B	37	40	parallel
Strand 5	B	237	240	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	125	first strand
Strand 2	B	128	138	anti-parallel
Strand 3	B	164	171	anti-parallel
Strand 4	B	189	192	parallel
Strand 5	B	209	212	parallel
Strand 6	B	155	157	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	92	95	anti-parallel
Strand 3	C	59	64	parallel
Strand 4	C	37	43	parallel
Strand 5	C	237	240	parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	125	first strand
Strand 2	C	128	138	anti-parallel
Strand 3	C	164	171	anti-parallel
Strand 4	C	189	192	parallel
Strand 5	C	209	212	parallel
Strand 6	C	155	157	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	D	92	95	anti-parallel
Strand 3	D	59	64	parallel
Strand 4	D	37	43	parallel
Strand 5	D	237	240	parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	125	first strand
Strand 2	D	128	137	anti-parallel
Strand 3	D	165	171	anti-parallel
Strand 4	D	189	192	parallel
Strand 5	D	209	212	parallel
Strand 6	D	155	157	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	29	first strand
Strand 2	E	92	95	anti-parallel
Strand 3	E	59	64	parallel
Strand 4	E	37	43	parallel
Strand 5	E	237	240	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	125	first strand
Strand 2	E	128	137	anti-parallel
Strand 3	E	165	170	anti-parallel
Strand 4	E	189	192	parallel
Strand 5	E	209	212	parallel
Strand 6	E	155	157	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	92	95	anti-parallel
Strand 3	F	59	62	parallel
Strand 4	F	37	40	parallel
Strand 5	F	237	240	parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	125	first strand
Strand 2	F	128	137	anti-parallel
Strand 3	F	165	170	anti-parallel
Strand 4	F	189	192	parallel
Strand 5	F	209	212	parallel
Strand 6	F	155	157	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1NMO

Analysis of interatomic Contacts of Structural Units in PDB entry:
1NMO