Analysis of interatomic Contacts of Structural Units in PDB entry:
1NMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NMS entry

There are 2 chains in PDB entry 1NMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 34HIS 277
B
 ASP 34HIS 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1NMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 60Right-handed 310
Helix 2
2
A
66 81Right-handed alpha
Helix 3
3
A
92 105Right-handed alpha
Helix 4
4
A
136 142Right-handed alpha
Helix 5
5
A
148 152Right-handed 310
Helix 6
6
A
214 227Right-handed alpha
Helix 7
7
A
231 247Right-handed alpha
Helix 8
8
A
253 257Right-handed 310
Helix 9
9
B
56 60Right-handed 310
Helix 10
10
B
66 81Right-handed alpha
Helix 11
11
B
92 105Right-handed alpha
Helix 12
12
B
136 141Right-handed alpha
Helix 13
13
B
142 144Right-handed 310
Helix 14
14
B
148 152Right-handed 310
Helix 15
15
B
214 227Right-handed alpha
Helix 16
16
B
231 247Right-handed alpha
Helix 17
17
B
253 257Right-handed 310
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There are 7 sheets in PDB entry 1NMS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
43 51parallel
Strand 3
A
111 119parallel
Strand 4
A
156 161parallel
Strand 5
A
193 197parallel
Strand 6
A
264 267anti-parallel
Strand 7
B
264 267anti-parallel
Strand 8
B
193 197anti-parallel
Strand 9
B
156 161parallel
Strand 10
B
111 119parallel
Strand 11
B
43 51parallel
Strand 12
B
84 89parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
126 129anti-parallel
Strand 3
A
132 135anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
B
186 187anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
B
172 173anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
212 213anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
126 129anti-parallel
Strand 3
B
132 135anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
212 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il