Analysis of interatomic Contacts of Structural Units in PDB entry:
1NMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NMT entry

There are 3 chains in PDB entry 1NMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 60LEU 451
B
 GLU 60LEU 451
C
 GLU 60LEU 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1NMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
69 71Right-handed 310
Helix 2
2
A
93 105Right-handed alpha
Helix 3
3
A
121 128Right-handed alpha
Helix 4
4
A
135 137Right-handed 310
Helix 5
5
A
188 203Right-handed alpha
Helix 6
6
A
232 237Right-handed alpha
Helix 7
7
A
249 256Right-handed alpha
Helix 8
8
A
272 288Right-handed 310
Helix 9
9
A
297 305Right-handed alpha
Helix 10
10
A
361 363Right-handed 310
Helix 11
11
A
368 386Right-handed alpha
Helix 12
12
A
399 401Right-handed 310
Helix 13
13
B
69 71Right-handed 310
Helix 14
14
B
93 106Right-handed alpha
Helix 15
15
B
121 128Right-handed alpha
Helix 16
16
B
135 137Right-handed 310
Helix 17
17
B
181 185Right-handed 310
Helix 18
18
B
188 203Right-handed alpha
Helix 19
19
B
232 237Right-handed alpha
Helix 20
20
B
249 254Right-handed alpha
Helix 21
21
B
272 288Right-handed 310
Helix 22
22
B
297 305Right-handed alpha
Helix 23
23
B
361 364Right-handed 310
Helix 24
24
B
368 386Right-handed alpha
Helix 25
25
B
399 401Right-handed 310
Helix 26
26
B
404 406Right-handed 310
Helix 27
27
C
69 71Right-handed 310
Helix 28
28
C
93 106Right-handed alpha
Helix 29
29
C
121 128Right-handed alpha
Helix 30
30
C
135 137Right-handed 310
Helix 31
31
C
181 183Right-handed 310
Helix 32
32
C
189 203Right-handed alpha
Helix 33
33
C
232 237Right-handed alpha
Helix 34
34
C
249 256Right-handed alpha
Helix 35
35
C
272 288Right-handed 310
Helix 36
36
C
297 305Right-handed alpha
Helix 37
37
C
361 363Right-handed 310
Helix 38
38
C
368 386Right-handed alpha
Helix 39
39
C
399 401Right-handed 310
Helix 40
40
C
403 406Right-handed alpha
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There are 16 sheets in PDB entry 1NMT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 87first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
149 162anti-parallel
Strand 4
A
167 175anti-parallel
Strand 5
A
208 212parallel
Strand 6
A
414 420anti-parallel
Strand 7
A
222 224anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
339 341anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
291 294anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 229first strand
Strand 2
A
390 394anti-parallel
Strand 3
A
352 355parallel
Strand 4
A
328 336anti-parallel
Strand 5
A
316 322anti-parallel
Strand 6
A
267 269anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 332first strand
Strand 2
A
358 360anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 87first strand
Strand 2
B
138 143anti-parallel
Strand 3
B
149 162anti-parallel
Strand 4
B
167 175anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 117first strand
Strand 2
B
339 341anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 162first strand
Strand 2
B
291 294anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 212first strand
Strand 2
B
416 420anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 229first strand
Strand 2
B
390 393anti-parallel
Strand 3
B
352 355parallel
Strand 4
B
328 336anti-parallel
Strand 5
B
316 322anti-parallel
Strand 6
B
267 269anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 332first strand
Strand 2
B
358 360anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 87first strand
Strand 2
C
138 143anti-parallel
Strand 3
C
149 162anti-parallel
Strand 4
C
167 175anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
115 117first strand
Strand 2
C
339 341anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 162first strand
Strand 2
C
291 294anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 212first strand
Strand 2
C
414 420anti-parallel
Strand 3
C
221 224anti-parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
226 229first strand
Strand 2
C
390 393anti-parallel
Strand 3
C
352 355parallel
Strand 4
C
328 336anti-parallel
Strand 5
C
316 322anti-parallel
Strand 6
C
267 269anti-parallel
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