Analysis of interatomic Contacts of Structural Units in PDB entry:
1NNB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NNB entry

There is 1 chain in PDB entry 1NNB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 84LEU 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There is 1 helix in PDB entry 1NNB. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
106 110Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1NNB. Click on sheet of interest to get list of strands forming it: S1, S2, S3, S4, S5, S6,

There are 4 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 125first strand
Strand 2
A
130 139anti-parallel
Strand 3
A
158 163anti-parallel
Strand 4
A
174 178anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 186first strand
Strand 2
A
191 197anti-parallel
Strand 3
A
204 209anti-parallel
Strand 4
A
212 218anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 235first strand
Strand 2
A
238 246anti-parallel
Strand 3
A
252 260anti-parallel
Strand 4
A
263 269anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in S4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 285first strand
Strand 2
A
288 293anti-parallel
Strand 3
A
303 308anti-parallel
Strand 4
A
313 318anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in S5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
362 365anti-parallel
Strand 3
A
373 379anti-parallel
Strand 4
A
393 402anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in S6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 410first strand
Strand 2
A
423 431anti-parallel
Strand 3
A
441 451anti-parallel
Strand 4
A
97 103anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il