Analysis of interatomic Contacts of Structural Units in PDB entry:
1NNT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NNT entry

There is 1 chain in PDB entry 1NNT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5ARG 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 1NNT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
41 53Right-handed alpha
Helix 3
3
A
60 69Right-handed alpha
Helix 4
4
A
105 110Right-handed alpha
Helix 5
5
A
121 135Right-handed alpha
Helix 6
6
A
147 156Right-handed alpha
Helix 7
6A
A
167 174Right-handed alpha
Helix 8
7
A
190 201Right-handed alpha
Helix 9
8
A
210 217Right-handed alpha
Helix 10
8A
A
218 223Right-handed alpha
Helix 11
9
A
257 275Right-handed alpha
Helix 12
10
A
315 321Right-handed alpha
Helix 13
11
A
321 332Right-handed alpha
Back to top of page

There is 1 sheet ( S1) in PDB entry 1NNT.

There are 11 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
32 39parallel
Strand 3
A
54 59parallel
Strand 4
A
74 82parallel
Strand 5
A
91 100parallel
Strand 6
A
112 116parallel
Strand 7
A
158 161parallel
Strand 8
A
205 209parallel
Strand 9
A
224 228parallel
Strand 10
A
245 255parallel
Strand 11
A
306 311parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il