Analysis of interatomic Contacts of Structural Units in PDB entry:
1NOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NOV entry

There are 6 chains in PDB entry 1NOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 55ASN 363
D
 ALA 364THR 383
B
 ASN 55ASN 363
E
 ALA 364PHE 380
C
 ARG 13ASN 363
F
 ALA 364PHE 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1NOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 71Right-handed alpha
Helix 2
2
A
73 75Right-handed 310
Helix 3
3
A
148 151Right-handed alpha
Helix 4
4
A
220 224Right-handed 310
Helix 5
5
A
341 353Right-handed alpha
Helix 6
6
D
366 380Right-handed alpha
Helix 7
7
B
61 70Right-handed alpha
Helix 8
8
B
149 152Right-handed alpha
Helix 9
9
B
159 161Right-handed 310
Helix 10
10
B
220 224Right-handed 310
Helix 11
11
B
328 332Right-handed 310
Helix 12
12
B
341 352Right-handed alpha
Helix 13
13
E
366 376Right-handed alpha
Helix 14
14
C
16 20Right-handed alpha
Helix 15
15
C
61 75Right-handed alpha
Helix 16
16
C
148 151Right-handed alpha
Helix 17
17
C
156 161Right-handed 310
Helix 18
18
C
220 224Right-handed 310
Helix 19
19
C
329 332Right-handed 310
Helix 20
20
C
341 353Right-handed alpha
Helix 21
21
F
366 377Right-handed alpha
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There are 12 sheets in PDB entry 1NOV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 105first strand
Strand 2
A
309 321anti-parallel
Strand 3
A
172 177anti-parallel
Strand 4
A
240 242anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 234first strand
Strand 2
A
187 193anti-parallel
Strand 3
A
296 303anti-parallel
Strand 4
A
109 115anti-parallel
Strand 5
A
121 129anti-parallel
Strand 6
A
141 144anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 206first strand
Strand 2
A
208 217anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 168first strand
Strand 2
A
319 323anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 105first strand
Strand 2
B
309 321anti-parallel
Strand 3
B
171 177anti-parallel
Strand 4
B
240 243anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 234first strand
Strand 2
B
187 193anti-parallel
Strand 3
B
296 303anti-parallel
Strand 4
B
109 115anti-parallel
Strand 5
B
121 129anti-parallel
Strand 6
B
141 144anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 206first strand
Strand 2
B
208 218anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 168first strand
Strand 2
B
319 323anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 105first strand
Strand 2
C
309 321anti-parallel
Strand 3
C
171 177anti-parallel
Strand 4
C
240 243anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 234first strand
Strand 2
C
187 193anti-parallel
Strand 3
C
296 303anti-parallel
Strand 4
C
109 115anti-parallel
Strand 5
C
121 129anti-parallel
Strand 6
C
141 144anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
197 206first strand
Strand 2
C
208 217anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 168first strand
Strand 2
C
319 323anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il