Analysis of interatomic Contacts of Structural Units in PDB entry:
1NU5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NU5 entry

There is 1 chain in PDB entry 1NU5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1NU5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 70Right-handed alpha
Helix 2
2
A
70 76Right-handed alpha
Helix 3
3
A
82 94Right-handed alpha
Helix 4
4
A
97 116Right-handed alpha
Helix 5
5
A
119 125Right-handed alpha
Helix 6
6
A
142 156Right-handed alpha
Helix 7
7
A
170 186Right-handed alpha
Helix 8
8
A
187 189Right-handed 310
Helix 9
9
A
200 215Right-handed alpha
Helix 10
10
A
227 238Right-handed alpha
Helix 11
11
A
250 260Right-handed alpha
Helix 12
12
A
269 274Right-handed alpha
Helix 13
13
A
275 290Right-handed alpha
Helix 14
14
A
301 313Right-handed alpha
Helix 15
15
A
325 330Right-handed alpha
Helix 16
16
A
359 367Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1NU5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 21first strand
Strand 2
A
24 38anti-parallel
Strand 3
A
41 47anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
345 347anti-parallel
Strand 3
A
341 342anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 138first strand
Strand 2
A
161 165parallel
Strand 3
A
190 194parallel
Strand 4
A
218 220parallel
Strand 5
A
241 244parallel
Strand 6
A
265 268parallel
Strand 7
A
292 295parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il