Analysis of interatomic Contacts of Structural Units in PDB entry:
1NUY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NUY entry

There is 1 chain in PDB entry 1NUY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1008ALA 1335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1NUY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1012 1024Right-handed alpha
Helix 2
2
A
1028 1050Right-handed alpha
Helix 3
3
A
1072 1088Right-handed alpha
Helix 4
4
A
1106 1108Right-handed 310
Helix 5
5
A
1122 1126Right-handed 310
Helix 6
6
A
1148 1153Right-handed 310
Helix 7
7
A
1155 1159Right-handed 310
Helix 8
8
A
1212 1219Right-handed 310
Helix 9
9
A
1220 1232Right-handed alpha
Helix 10
10
A
1247 1259Right-handed alpha
Helix 11
11
A
1280 1291Right-handed alpha
Helix 12
12
A
1301 1305Right-handed 310
Helix 13
13
A
1320 1334Right-handed alpha
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There are 3 sheets in PDB entry 1NUY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1059 1063first strand
Strand 2
A
1069 1071anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1103 1104first strand
Strand 2
A
1091 1096anti-parallel
Strand 3
A
1110 1121parallel
Strand 4
A
1132 1140anti-parallel
Strand 5
A
1161 1167anti-parallel
Strand 6
A
1171 1177anti-parallel
Strand 7
A
1180 1187anti-parallel
Strand 8
A
1192 1197anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1241 1242first strand
Strand 2
A
1208 1210parallel
Strand 3
A
1261 1264parallel
Strand 4
A
1316 1319anti-parallel
Strand 5
A
1294 1296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il