Analysis of interatomic Contacts of Structural Units in PDB entry:
1NVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NVJ entry

There are 6 chains in PDB entry 1NVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 127
B
 ALA 2ARG 127
C
 ALA 2GLU 128
D
 ALA 2ARG 140
E
 ALA 2LYS 126
F
 ALA 2ARG 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1NVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 23Right-handed alpha
Helix 2
2
A
57 74Right-handed alpha
Helix 3
3
A
103 121Right-handed alpha
Helix 4
4
B
14 23Right-handed alpha
Helix 5
5
B
57 74Right-handed alpha
Helix 6
6
B
103 122Right-handed alpha
Helix 7
7
C
14 23Right-handed alpha
Helix 8
8
C
39 43Right-handed 310
Helix 9
9
C
57 74Right-handed alpha
Helix 10
10
C
103 122Right-handed alpha
Helix 11
11
D
14 23Right-handed alpha
Helix 12
12
D
57 74Right-handed alpha
Helix 13
13
D
103 122Right-handed alpha
Helix 14
14
E
14 23Right-handed alpha
Helix 15
15
E
57 74Right-handed alpha
Helix 16
16
E
103 122Right-handed alpha
Helix 17
17
F
14 23Right-handed alpha
Helix 18
18
F
57 72Right-handed alpha
Helix 19
19
F
103 122Right-handed alpha
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There are 9 sheets in PDB entry 1NVJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
79 84parallel
Strand 3
A
93 101anti-parallel
Strand 4
A
30 37anti-parallel
Strand 5
B
30 37anti-parallel
Strand 6
B
93 101anti-parallel
Strand 7
B
76 84anti-parallel
Strand 8
B
4 9parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
124 126anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
50 54anti-parallel
Strand 3
B
124 127anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 9first strand
Strand 2
C
76 84parallel
Strand 3
C
93 101anti-parallel
Strand 4
C
30 37anti-parallel
Strand 5
D
30 37anti-parallel
Strand 6
D
93 101anti-parallel
Strand 7
D
76 84anti-parallel
Strand 8
D
4 9parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 88first strand
Strand 2
C
50 54anti-parallel
Strand 3
C
124 126anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 88first strand
Strand 2
D
50 53anti-parallel
Strand 3
D
125 128anti-parallel
Strand 4
D
135 138anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 9first strand
Strand 2
E
76 84parallel
Strand 3
E
93 101anti-parallel
Strand 4
E
30 37anti-parallel
Strand 5
F
30 37anti-parallel
Strand 6
F
93 101anti-parallel
Strand 7
F
76 84anti-parallel
Strand 8
F
4 9parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
86 88first strand
Strand 2
E
50 54anti-parallel
Strand 3
E
124 125anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
86 88first strand
Strand 2
F
50 54anti-parallel
Strand 3
F
124 127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il