Analysis of interatomic Contacts of Structural Units in PDB entry:
1NVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NVM entry

There are 8 chains in PDB entry 1NVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LYS 341
B
 MET 1ALA 312
C
 PHE 3ALA 339
D
 GLN 3LEU 310
E
 THR 2ALA 339
F
 LYS 4ALA 312
G
 PHE 3LYS 341
H
 LYS 4LEU 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are120 helices in PDB entry 1NVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 23Right-handed alpha
Helix 2
2
A
28 43Right-handed alpha
Helix 3
3
A
68 78Right-handed alpha
Helix 4
4
A
95 106Right-handed alpha
Helix 5
5
A
118 121Right-handed 310
Helix 6
6
A
122 133Right-handed alpha
Helix 7
7
A
147 162Right-handed alpha
Helix 8
8
A
176 191Right-handed alpha
Helix 9
9
A
207 218Right-handed alpha
Helix 10
10
A
226 230Right-handed 310
Helix 11
11
A
238 250Right-handed alpha
Helix 12
12
A
256 267Right-handed alpha
Helix 13
13
A
268 272Right-handed 310
Helix 14
14
A
279 289Right-handed alpha
Helix 15
15
A
293 306Right-handed alpha
Helix 16
16
A
308 320Right-handed alpha
Helix 17
17
A
326 341Right-handed alpha
Helix 18
18
B
13 27Right-handed alpha
Helix 19
19
B
42 51Right-handed alpha
Helix 20
20
B
58 66Right-handed alpha
Helix 21
21
B
67 70Right-handed 310
Helix 22
22
B
80 95Right-handed alpha
Helix 23
23
B
113 118Right-handed alpha
Helix 24
24
B
131 146Right-handed alpha
Helix 25
25
B
162 164Right-handed 310
Helix 26
26
B
165 170Right-handed alpha
Helix 27
27
B
171 186Right-handed alpha
Helix 28
28
B
219 236Right-handed alpha
Helix 29
29
B
288 311Right-handed alpha
Helix 30
30
C
17 23Right-handed alpha
Helix 31
31
C
28 42Right-handed alpha
Helix 32
32
C
68 80Right-handed alpha
Helix 33
33
C
95 106Right-handed alpha
Helix 34
34
C
118 121Right-handed 310
Helix 35
35
C
122 133Right-handed alpha
Helix 36
36
C
142 146Right-handed 310
Helix 37
37
C
147 162Right-handed alpha
Helix 38
38
C
176 191Right-handed alpha
Helix 39
39
C
207 218Right-handed alpha
Helix 40
40
C
226 230Right-handed 310
Helix 41
41
C
238 249Right-handed alpha
Helix 42
42
C
256 267Right-handed alpha
Helix 43
43
C
268 272Right-handed 310
Helix 44
44
C
279 289Right-handed alpha
Helix 45
45
C
293 306Right-handed alpha
Helix 46
46
C
308 320Right-handed alpha
Helix 47
47
C
326 339Right-handed alpha
Helix 48
48
D
13 27Right-handed alpha
Helix 49
49
D
42 51Right-handed alpha
Helix 50
50
D
58 66Right-handed alpha
Helix 51
51
D
67 70Right-handed 310
Helix 52
52
D
80 95Right-handed alpha
Helix 53
53
D
113 118Right-handed alpha
Helix 54
54
D
131 146Right-handed alpha
Helix 55
55
D
162 164Right-handed 310
Helix 56
56
D
165 170Right-handed alpha
Helix 57
57
D
171 186Right-handed alpha
Helix 58
58
D
219 236Right-handed alpha
Helix 59
59
D
288 310Right-handed alpha
Helix 60
60
E
17 23Right-handed alpha
Helix 61
61
E
28 42Right-handed alpha
Helix 62
62
E
68 78Right-handed alpha
Helix 63
63
E
95 106Right-handed alpha
Helix 64
64
E
118 121Right-handed 310
Helix 65
65
E
122 133Right-handed alpha
Helix 66
66
E
142 146Right-handed 310
Helix 67
67
E
147 162Right-handed alpha
Helix 68
68
E
176 191Right-handed alpha
Helix 69
69
E
207 218Right-handed alpha
Helix 70
70
E
226 230Right-handed 310
Helix 71
71
E
238 250Right-handed alpha
Helix 72
72
E
256 267Right-handed alpha
Helix 73
73
E
268 272Right-handed 310
Helix 74
74
E
279 289Right-handed alpha
Helix 75
75
E
293 305Right-handed alpha
Helix 76
76
E
308 319Right-handed alpha
Helix 77
77
E
326 339Right-handed alpha
Helix 78
78
F
13 27Right-handed alpha
Helix 79
79
F
42 51Right-handed alpha
Helix 80
80
F
58 66Right-handed alpha
Helix 81
81
F
67 70Right-handed 310
Helix 82
82
F
83 95Right-handed alpha
Helix 83
83
F
113 118Right-handed alpha
Helix 84
84
F
119 122Right-handed 310
Helix 85
85
F
131 146Right-handed alpha
Helix 86
86
F
162 164Right-handed 310
Helix 87
87
F
165 171Right-handed alpha
Helix 88
88
F
171 186Right-handed alpha
Helix 89
89
F
219 236Right-handed alpha
Helix 90
90
F
288 310Right-handed alpha
Helix 91
91
G
17 23Right-handed alpha
Helix 92
92
G
28 42Right-handed alpha
Helix 93
93
G
68 78Right-handed alpha
Helix 94
94
G
95 106Right-handed alpha
Helix 95
95
G
118 121Right-handed 310
Helix 96
96
G
122 132Right-handed alpha
Helix 97
97
G
142 146Right-handed 310
Helix 98
98
G
147 162Right-handed alpha
Helix 99
99
G
176 191Right-handed alpha
Helix 100
100
G
207 218Right-handed alpha
Helix 101
101
G
226 230Right-handed 310
Helix 102
102
G
238 249Right-handed alpha
Helix 103
103
G
256 267Right-handed alpha
Helix 104
104
G
268 272Right-handed 310
Helix 105
105
G
279 289Right-handed alpha
Helix 106
106
G
293 306Right-handed alpha
Helix 107
107
G
308 319Right-handed alpha
Helix 108
108
G
326 341Right-handed alpha
Helix 109
109
H
13 27Right-handed alpha
Helix 110
110
H
42 51Right-handed alpha
Helix 111
111
H
58 66Right-handed alpha
Helix 112
112
H
67 70Right-handed 310
Helix 113
113
H
80 95Right-handed alpha
Helix 114
114
H
113 118Right-handed alpha
Helix 115
115
H
131 146Right-handed alpha
Helix 116
116
H
162 164Right-handed 310
Helix 117
117
H
165 170Right-handed alpha
Helix 118
118
H
171 186Right-handed alpha
Helix 119
119
H
219 236Right-handed alpha
Helix 120
120
H
288 310Right-handed alpha
Back to top of page

There are 20 sheets in PDB entry 1NVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
46 48parallel
Strand 3
A
84 89parallel
Strand 4
A
109 115parallel
Strand 5
A
135 141parallel
Strand 6
A
165 169parallel
Strand 7
A
196 200parallel
Strand 8
A
222 225parallel
Strand 9
A
10 13parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
30 36parallel
Strand 3
B
5 10parallel
Strand 4
B
72 77parallel
Strand 5
B
99 102parallel
Strand 6
B
126 128parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 199first strand
Strand 2
B
150 160parallel
Strand 3
B
207 215anti-parallel
Strand 4
B
268 277anti-parallel
Strand 5
B
241 243anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 199first strand
Strand 2
B
150 160parallel
Strand 3
B
207 215anti-parallel
Strand 4
B
268 277anti-parallel
Strand 5
B
248 252anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 260first strand
Strand 2
B
264 266anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
46 48parallel
Strand 3
C
84 89parallel
Strand 4
C
109 115parallel
Strand 5
C
135 141parallel
Strand 6
C
165 169parallel
Strand 7
C
196 200parallel
Strand 8
C
222 225parallel
Strand 9
C
10 13parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 56first strand
Strand 2
D
30 36parallel
Strand 3
D
5 10parallel
Strand 4
D
72 77parallel
Strand 5
D
99 102parallel
Strand 6
D
126 128parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
192 199first strand
Strand 2
D
150 160parallel
Strand 3
D
207 215anti-parallel
Strand 4
D
268 277anti-parallel
Strand 5
D
241 243anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
192 199first strand
Strand 2
D
150 160parallel
Strand 3
D
207 215anti-parallel
Strand 4
D
268 277anti-parallel
Strand 5
D
248 252anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
258 260first strand
Strand 2
D
264 266anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 13first strand
Strand 2
E
46 48parallel
Strand 3
E
84 89parallel
Strand 4
E
109 115parallel
Strand 5
E
135 141parallel
Strand 6
E
165 169parallel
Strand 7
E
196 200parallel
Strand 8
E
222 225parallel
Strand 9
E
10 13parallel
Back to list of sheets
Back to top of page

There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
55 56first strand
Strand 2
F
30 36parallel
Strand 3
F
5 10parallel
Strand 4
F
72 77parallel
Strand 5
F
99 102parallel
Strand 6
F
126 128parallel
Back to list of sheets
Back to top of page

There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
192 199first strand
Strand 2
F
150 160parallel
Strand 3
F
207 215anti-parallel
Strand 4
F
268 277anti-parallel
Strand 5
F
241 243anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
192 199first strand
Strand 2
F
150 160parallel
Strand 3
F
207 215anti-parallel
Strand 4
F
268 277anti-parallel
Strand 5
F
248 252anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
258 260first strand
Strand 2
F
264 266anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
10 16first strand
Strand 2
G
46 49parallel
Strand 3
G
84 89parallel
Strand 4
G
109 115parallel
Strand 5
G
135 141parallel
Strand 6
G
165 169parallel
Strand 7
G
196 200parallel
Strand 8
G
222 225parallel
Strand 9
G
10 16parallel
Back to list of sheets
Back to top of page

There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
55 56first strand
Strand 2
H
30 36parallel
Strand 3
H
5 10parallel
Strand 4
H
72 77parallel
Strand 5
H
99 102parallel
Strand 6
H
126 128parallel
Back to list of sheets
Back to top of page

There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
192 199first strand
Strand 2
H
150 160parallel
Strand 3
H
207 215anti-parallel
Strand 4
H
268 277anti-parallel
Strand 5
H
241 243anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
192 199first strand
Strand 2
H
150 160parallel
Strand 3
H
207 215anti-parallel
Strand 4
H
268 277anti-parallel
Strand 5
H
248 252anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
258 260first strand
Strand 2
H
264 266anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il