Analysis of interatomic Contacts of Structural Units in PDB entry:
1NVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NVT entry

There are 2 chains in PDB entry 1NVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1LYS 287
B
 GLY 1LYS 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1NVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 37Right-handed alpha
Helix 2
2
A
49 54Right-handed 310
Helix 3
3
A
55 64Right-handed alpha
Helix 4
4
A
76 82Right-handed 310
Helix 5
5
A
86 93Right-handed alpha
Helix 6
6
A
110 124Right-handed alpha
Helix 7
7
A
137 148Right-handed alpha
Helix 8
8
A
159 175Right-handed alpha
Helix 9
9
A
177 181Right-handed alpha
Helix 10
10
A
236 244Right-handed alpha
Helix 11
11
A
252 269Right-handed alpha
Helix 12
12
A
273 286Right-handed alpha
Helix 13
13
B
25 37Right-handed alpha
Helix 14
14
B
52 54Right-handed 310
Helix 15
15
B
55 64Right-handed alpha
Helix 16
16
B
76 82Right-handed 310
Helix 17
17
B
86 93Right-handed alpha
Helix 18
18
B
110 124Right-handed alpha
Helix 19
19
B
137 148Right-handed alpha
Helix 20
20
B
159 175Right-handed alpha
Helix 21
21
B
236 244Right-handed alpha
Helix 22
22
B
252 269Right-handed alpha
Helix 23
23
B
273 286Right-handed alpha
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There are 4 sheets in PDB entry 1NVT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 47first strand
Strand 2
A
12 18parallel
Strand 3
A
67 70parallel
Strand 4
A
97 101anti-parallel
Strand 5
A
104 108anti-parallel
Strand 6
A
84 85parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
152 156parallel
Strand 3
A
130 134parallel
Strand 4
A
196 199parallel
Strand 5
A
225 228parallel
Strand 6
A
248 250parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 47first strand
Strand 2
B
12 18parallel
Strand 3
B
67 70parallel
Strand 4
B
97 101anti-parallel
Strand 5
B
104 108anti-parallel
Strand 6
B
84 85parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 185first strand
Strand 2
B
152 156parallel
Strand 3
B
130 134parallel
Strand 4
B
196 199parallel
Strand 5
B
225 228parallel
Strand 6
B
248 250parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il