Analysis of interatomic Contacts of Structural Units in PDB entry:
1NY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NY5 entry

There are 2 chains in PDB entry 1NY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 384
B
 MET 1ASN 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1NY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 24Right-handed alpha
Helix 2
2
A
32 43Right-handed alpha
Helix 3
3
A
58 70Right-handed alpha
Helix 4
4
A
83 92Right-handed alpha
Helix 5
5
A
104 134Right-handed alpha
Helix 6
6
A
143 157Right-handed alpha
Helix 7
7
A
172 184Right-handed alpha
Helix 8
8
A
200 210Right-handed alpha
Helix 9
9
A
225 230Right-handed alpha
Helix 10
10
A
239 243Right-handed 310
Helix 11
11
A
244 258Right-handed alpha
Helix 12
12
A
282 289Right-handed alpha
Helix 13
13
A
293 301Right-handed alpha
Helix 14
14
A
309 312Right-handed 310
Helix 15
15
A
313 332Right-handed alpha
Helix 16
16
A
340 350Right-handed alpha
Helix 17
17
A
354 370Right-handed alpha
Helix 18
18
A
376 384Right-handed alpha
Helix 19
19
B
9 24Right-handed alpha
Helix 20
20
B
32 43Right-handed alpha
Helix 21
21
B
58 70Right-handed alpha
Helix 22
22
B
83 93Right-handed alpha
Helix 23
23
B
104 135Right-handed alpha
Helix 24
24
B
143 157Right-handed alpha
Helix 25
25
B
172 183Right-handed alpha
Helix 26
26
B
200 210Right-handed alpha
Helix 27
27
B
225 230Right-handed alpha
Helix 28
28
B
240 243Right-handed 310
Helix 29
29
B
244 258Right-handed alpha
Helix 30
30
B
282 289Right-handed alpha
Helix 31
31
B
293 301Right-handed alpha
Helix 32
32
B
313 332Right-handed alpha
Helix 33
33
B
340 350Right-handed alpha
Helix 34
34
B
354 369Right-handed alpha
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There are 8 sheets in PDB entry 1NY5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
2 6parallel
Strand 3
A
47 51parallel
Strand 4
A
74 80parallel
Strand 5
A
97 101parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
234 238parallel
Strand 3
A
274 279parallel
Strand 4
A
163 166parallel
Strand 5
A
303 306parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
269 270anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
374 375parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
2 6parallel
Strand 3
B
47 51parallel
Strand 4
B
74 79parallel
Strand 5
B
97 100parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 195first strand
Strand 2
B
234 238parallel
Strand 3
B
274 279parallel
Strand 4
B
163 166parallel
Strand 5
B
303 306parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
269 270anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 339first strand
Strand 2
B
374 375parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il