Analysis of interatomic Contacts of Structural Units in PDB entry:
1NY6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1NY6 entry

There are 14 chains in PDB entry 1NY6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 138	VAL 384
B	GLU 142	VAL 384
C	GLU 137	VAL 384
D	GLU 138	VAL 384
E	GLU 137	VAL 384
F	GLU 137	VAL 384
G	GLU 137	VAL 384
H	GLU 138	CYS 382
I	GLU 138	VAL 384
J	GLU 138	VAL 384
K	GLU 137	VAL 384
L	GLU 138	LEU 383
M	GLU 138	VAL 384
N	GLU 138	VAL 384

There are186 helices in PDB entry 1NY6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	143	158	Right-handed alpha
Helix 2	2	A	172	183	Right-handed alpha
Helix 3	3	A	200	210	Right-handed alpha
Helix 4	4	A	225	230	Right-handed alpha
Helix 5	5	A	239	243	Right-handed 310
Helix 6	6	A	244	257	Right-handed alpha
Helix 7	7	A	282	290	Right-handed alpha
Helix 8	8	A	293	301	Right-handed alpha
Helix 9	9	A	309	312	Right-handed 310
Helix 10	10	A	313	332	Right-handed alpha
Helix 11	11	A	340	350	Right-handed alpha
Helix 12	12	A	355	370	Right-handed alpha
Helix 13	13	A	376	382	Right-handed alpha
Helix 14	14	B	145	157	Right-handed alpha
Helix 15	15	B	172	184	Right-handed alpha
Helix 16	16	B	197	199	Right-handed 310
Helix 17	17	B	202	210	Right-handed alpha
Helix 18	18	B	225	230	Right-handed alpha
Helix 19	19	B	239	243	Right-handed 310
Helix 20	20	B	244	258	Right-handed alpha
Helix 21	21	B	282	289	Right-handed alpha
Helix 22	22	B	293	301	Right-handed alpha
Helix 23	23	B	302	304	Right-handed 310
Helix 24	24	B	313	332	Right-handed alpha
Helix 25	25	B	340	350	Right-handed alpha
Helix 26	26	B	354	369	Right-handed alpha
Helix 27	27	B	376	381	Right-handed alpha
Helix 28	28	C	143	156	Right-handed alpha
Helix 29	29	C	157	159	Right-handed 310
Helix 30	30	C	172	183	Right-handed alpha
Helix 31	31	C	195	199	Right-handed 310
Helix 32	32	C	203	210	Right-handed alpha
Helix 33	33	C	225	230	Right-handed alpha
Helix 34	34	C	240	243	Right-handed 310
Helix 35	35	C	244	257	Right-handed alpha
Helix 36	36	C	283	289	Right-handed alpha
Helix 37	37	C	293	301	Right-handed alpha
Helix 38	38	C	309	312	Right-handed 310
Helix 39	39	C	313	332	Right-handed alpha
Helix 40	40	C	340	350	Right-handed alpha
Helix 41	41	C	354	369	Right-handed alpha
Helix 42	42	C	376	382	Right-handed alpha
Helix 43	43	D	143	158	Right-handed alpha
Helix 44	44	D	172	184	Right-handed alpha
Helix 45	45	D	200	210	Right-handed alpha
Helix 46	46	D	225	231	Right-handed alpha
Helix 47	47	D	239	243	Right-handed 310
Helix 48	48	D	244	257	Right-handed alpha
Helix 49	49	D	282	290	Right-handed alpha
Helix 50	50	D	293	302	Right-handed alpha
Helix 51	51	D	309	312	Right-handed 310
Helix 52	52	D	313	332	Right-handed alpha
Helix 53	53	D	340	348	Right-handed alpha
Helix 54	54	D	355	360	Right-handed alpha
Helix 55	55	D	360	369	Right-handed alpha
Helix 56	56	D	376	382	Right-handed alpha
Helix 57	57	E	143	157	Right-handed alpha
Helix 58	58	E	172	183	Right-handed alpha
Helix 59	59	E	200	210	Right-handed alpha
Helix 60	60	E	225	230	Right-handed alpha
Helix 61	61	E	244	258	Right-handed alpha
Helix 62	62	E	282	290	Right-handed alpha
Helix 63	63	E	293	301	Right-handed alpha
Helix 64	64	E	302	304	Right-handed 310
Helix 65	65	E	313	332	Right-handed alpha
Helix 66	66	E	340	350	Right-handed alpha
Helix 67	67	E	354	370	Right-handed alpha
Helix 68	68	F	143	158	Right-handed alpha
Helix 69	69	F	172	182	Right-handed alpha
Helix 70	70	F	200	210	Right-handed alpha
Helix 71	71	F	224	230	Right-handed alpha
Helix 72	72	F	240	243	Right-handed 310
Helix 73	73	F	244	258	Right-handed alpha
Helix 74	74	F	282	290	Right-handed alpha
Helix 75	75	F	293	301	Right-handed alpha
Helix 76	76	F	309	315	Right-handed 310
Helix 77	77	F	316	333	Right-handed alpha
Helix 78	78	F	340	347	Right-handed alpha
Helix 79	79	F	356	370	Right-handed alpha
Helix 80	80	F	376	381	Right-handed alpha
Helix 81	81	G	143	157	Right-handed alpha
Helix 82	82	G	172	184	Right-handed alpha
Helix 83	83	G	203	208	Right-handed alpha
Helix 84	84	G	225	230	Right-handed alpha
Helix 85	85	G	240	243	Right-handed 310
Helix 86	86	G	244	257	Right-handed alpha
Helix 87	87	G	282	289	Right-handed alpha
Helix 88	88	G	293	301	Right-handed alpha
Helix 89	89	G	309	312	Right-handed 310
Helix 90	90	G	313	332	Right-handed alpha
Helix 91	91	G	340	348	Right-handed alpha
Helix 92	92	G	356	369	Right-handed alpha
Helix 93	93	G	376	382	Right-handed alpha
Helix 94	94	H	144	158	Right-handed alpha
Helix 95	95	H	172	184	Right-handed alpha
Helix 96	96	H	200	208	Right-handed alpha
Helix 97	97	H	225	230	Right-handed alpha
Helix 98	98	H	239	243	Right-handed 310
Helix 99	99	H	244	258	Right-handed alpha
Helix 100	100	H	282	289	Right-handed alpha
Helix 101	101	H	293	300	Right-handed alpha
Helix 102	102	H	309	312	Right-handed 310
Helix 103	103	H	313	331	Right-handed alpha
Helix 104	104	H	340	350	Right-handed alpha
Helix 105	105	H	356	367	Right-handed alpha
Helix 106	106	H	376	381	Right-handed alpha
Helix 107	107	I	143	157	Right-handed alpha
Helix 108	108	I	172	184	Right-handed alpha
Helix 109	109	I	197	199	Right-handed 310
Helix 110	110	I	200	209	Right-handed alpha
Helix 111	111	I	225	230	Right-handed alpha
Helix 112	112	I	240	243	Right-handed 310
Helix 113	113	I	244	257	Right-handed alpha
Helix 114	114	I	282	290	Right-handed alpha
Helix 115	115	I	293	301	Right-handed alpha
Helix 116	116	I	309	312	Right-handed 310
Helix 117	117	I	313	332	Right-handed alpha
Helix 118	118	I	340	348	Right-handed alpha
Helix 119	119	I	355	367	Right-handed alpha
Helix 120	120	I	376	382	Right-handed alpha
Helix 121	121	J	143	158	Right-handed alpha
Helix 122	122	J	172	182	Right-handed alpha
Helix 123	123	J	200	209	Right-handed alpha
Helix 124	124	J	225	230	Right-handed alpha
Helix 125	125	J	239	243	Right-handed 310
Helix 126	126	J	244	258	Right-handed alpha
Helix 127	127	J	282	289	Right-handed alpha
Helix 128	128	J	293	299	Right-handed alpha
Helix 129	129	J	300	302	Right-handed 310
Helix 130	130	J	309	313	Right-handed 310
Helix 131	131	J	316	332	Right-handed alpha
Helix 132	132	J	340	348	Right-handed alpha
Helix 133	133	J	354	369	Right-handed alpha
Helix 134	134	J	376	384	Right-handed alpha
Helix 135	135	K	146	158	Right-handed alpha
Helix 136	136	K	172	183	Right-handed alpha
Helix 137	137	K	200	210	Right-handed alpha
Helix 138	138	K	225	230	Right-handed alpha
Helix 139	139	K	239	243	Right-handed 310
Helix 140	140	K	244	258	Right-handed alpha
Helix 141	141	K	282	290	Right-handed alpha
Helix 142	142	K	293	302	Right-handed alpha
Helix 143	143	K	309	312	Right-handed 310
Helix 144	144	K	313	332	Right-handed alpha
Helix 145	145	K	340	350	Right-handed alpha
Helix 146	146	K	355	370	Right-handed alpha
Helix 147	147	K	376	382	Right-handed alpha
Helix 148	148	L	145	157	Right-handed alpha
Helix 149	149	L	172	184	Right-handed alpha
Helix 150	150	L	200	210	Right-handed alpha
Helix 151	151	L	225	230	Right-handed alpha
Helix 152	152	L	244	258	Right-handed alpha
Helix 153	153	L	282	289	Right-handed alpha
Helix 154	154	L	293	301	Right-handed alpha
Helix 155	155	L	309	313	Right-handed 310
Helix 156	156	L	316	332	Right-handed alpha
Helix 157	157	L	340	350	Right-handed alpha
Helix 158	158	L	354	369	Right-handed alpha
Helix 159	159	L	378	383	Right-handed 310
Helix 160	160	M	143	158	Right-handed alpha
Helix 161	161	M	172	184	Right-handed alpha
Helix 162	162	M	197	199	Right-handed 310
Helix 163	163	M	200	209	Right-handed alpha
Helix 164	164	M	225	231	Right-handed alpha
Helix 165	165	M	240	243	Right-handed 310
Helix 166	166	M	244	256	Right-handed alpha
Helix 167	167	M	282	289	Right-handed alpha
Helix 168	168	M	293	301	Right-handed alpha
Helix 169	169	M	313	332	Right-handed alpha
Helix 170	170	M	342	350	Right-handed alpha
Helix 171	171	M	354	370	Right-handed alpha
Helix 172	172	M	378	383	Right-handed alpha
Helix 173	173	N	143	158	Right-handed alpha
Helix 174	174	N	172	183	Right-handed alpha
Helix 175	175	N	195	199	Right-handed 310
Helix 176	176	N	205	210	Right-handed alpha
Helix 177	177	N	225	230	Right-handed alpha
Helix 178	178	N	239	243	Right-handed 310
Helix 179	179	N	244	258	Right-handed alpha
Helix 180	180	N	282	289	Right-handed alpha
Helix 181	181	N	293	301	Right-handed alpha
Helix 182	182	N	302	304	Right-handed 310
Helix 183	183	N	316	331	Right-handed alpha
Helix 184	184	N	340	348	Right-handed alpha
Helix 185	185	N	354	369	Right-handed alpha
Helix 186	186	N	377	382	Right-handed alpha

There are 43 sheets in PDB entry 1NY6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	194	first strand
Strand 2	A	234	237	parallel
Strand 3	A	274	279	parallel
Strand 4	A	163	167	parallel
Strand 5	A	303	307	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	268	270	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	374	375	parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	195	first strand
Strand 2	B	234	238	parallel
Strand 3	B	274	275	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	269	270	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	374	375	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	194	first strand
Strand 2	C	234	238	parallel
Strand 3	C	274	279	parallel
Strand 4	C	163	166	parallel
Strand 5	C	303	306	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	269	270	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	374	375	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	166	first strand
Strand 2	D	303	306	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	194	first strand
Strand 2	D	236	237	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	260	first strand
Strand 2	D	269	270	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	191	192	first strand
Strand 2	E	234	235	parallel
Strand 3	E	274	275	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	268	270	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	339	first strand
Strand 2	E	374	375	parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	191	195	first strand
Strand 2	F	234	238	parallel
Strand 3	F	274	279	parallel
Strand 4	F	163	166	parallel
Strand 5	F	303	306	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	261	first strand
Strand 2	F	268	270	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	339	first strand
Strand 2	F	374	375	parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	191	195	first strand
Strand 2	G	234	238	parallel
Strand 3	G	274	279	parallel
Strand 4	G	163	166	parallel
Strand 5	G	303	306	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	260	first strand
Strand 2	G	269	270	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	338	339	first strand
Strand 2	G	374	375	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	167	first strand
Strand 2	H	305	307	parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	191	195	first strand
Strand 2	H	234	238	parallel
Strand 3	H	274	275	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	259	260	first strand
Strand 2	H	269	270	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	191	195	first strand
Strand 2	I	234	238	parallel
Strand 3	I	274	279	parallel
Strand 4	I	163	166	parallel
Strand 5	I	303	306	parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	210	211	first strand
Strand 2	I	223	224	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	259	261	first strand
Strand 2	I	268	270	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	338	339	first strand
Strand 2	I	374	375	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	163	166	first strand
Strand 2	J	303	306	parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	191	195	first strand
Strand 2	J	234	238	parallel
Strand 3	J	274	276	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	259	261	first strand
Strand 2	J	268	270	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	338	339	first strand
Strand 2	J	374	375	parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	191	192	first strand
Strand 2	K	234	235	parallel
Strand 3	K	274	275	parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	259	261	first strand
Strand 2	K	268	270	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	338	339	first strand
Strand 2	K	374	375	parallel

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There are 5 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	191	194	first strand
Strand 2	L	234	237	parallel
Strand 3	L	274	277	parallel
Strand 4	L	163	167	parallel
Strand 5	L	304	307	parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	259	261	first strand
Strand 2	L	268	270	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	338	339	first strand
Strand 2	L	374	375	parallel

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There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	192	195	first strand
Strand 2	M	235	238	parallel
Strand 3	M	275	279	parallel
Strand 4	M	163	167	parallel
Strand 5	M	304	307	parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	210	211	first strand
Strand 2	M	223	224	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	259	260	first strand
Strand 2	M	269	270	anti-parallel

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There are 5 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	191	194	first strand
Strand 2	N	234	237	parallel
Strand 3	N	274	279	parallel
Strand 4	N	163	167	parallel
Strand 5	N	305	307	parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	259	260	first strand
Strand 2	N	269	270	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1NY6

Analysis of interatomic Contacts of Structural Units in PDB entry:
1NY6