Analysis of interatomic Contacts of Structural Units in PDB entry:
1NYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NYL entry

There is 1 chain in PDB entry 1NYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8ASP 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1NYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 18Right-handed alpha
Helix 2
2
A
40 57Right-handed alpha
Helix 3
3
A
76 89Right-handed alpha
Helix 4
4
A
102 116Right-handed alpha
Helix 5
5
A
125 133Right-handed alpha
Helix 6
6
A
149 163Right-handed alpha
Helix 7
7
A
182 186Right-handed 310
Helix 8
8
A
210 223Right-handed alpha
Helix 9
9
A
232 234Right-handed 310
Helix 10
10
A
235 247Right-handed alpha
Helix 11
11
A
269 278Right-handed alpha
Helix 12
12
A
292 300Right-handed alpha
Helix 13
13
A
302 311Right-handed alpha
Helix 14
14
A
323 339Right-handed alpha
Helix 15
15
A
390 392Right-handed 310
Helix 16
16
A
505 509Right-handed 310
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There are 6 sheets in PDB entry 1NYL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
60 65parallel
Strand 3
A
97 98parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
171 174anti-parallel
Strand 3
A
189 193anti-parallel
Strand 4
A
207 209anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 230first strand
Strand 2
A
254 258parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
515 518parallel
Strand 3
A
522 526anti-parallel
Strand 4
A
537 542anti-parallel
Strand 5
A
465 471parallel
Strand 6
A
497 503anti-parallel
Strand 7
A
344 345anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 423first strand
Strand 2
A
432 435anti-parallel
Strand 3
A
348 353parallel
Strand 4
A
384 388anti-parallel
Strand 5
A
459 460anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 364first strand
Strand 2
A
378 382anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il