Analysis of interatomic Contacts of Structural Units in PDB entry:
1NZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NZJ entry

There is 1 chain in PDB entry 1NZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4VAL 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1NZJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 36Right-handed alpha
Helix 2
2
A
48 52Right-handed 310
Helix 3
3
A
55 67Right-handed alpha
Helix 4
4
A
81 95Right-handed alpha
Helix 5
5
A
104 111Right-handed alpha
Helix 6
6
A
153 159Right-handed alpha
Helix 7
7
A
171 183Right-handed alpha
Helix 8
8
A
193 196Right-handed 310
Helix 9
9
A
197 209Right-handed alpha
Helix 10
10
A
243 254Right-handed alpha
Helix 11
11
A
261 265Right-handed 310
Helix 12
12
A
266 277Right-handed alpha
Helix 13
13
A
279 283Right-handed 310
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There are 5 sheets in PDB entry 1NZJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
39 44parallel
Strand 3
A
76 77parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
130 133anti-parallel
Strand 3
A
162 164anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
148 151anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 191first strand
Strand 2
A
214 218parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
288 289parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il