Analysis of interatomic Contacts of Structural Units in PDB entry:
1NZW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1NZW entry

There are 8 chains in PDB entry 1NZW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 7	SER 500
B	ALA 7	SER 500
C	ALA 7	SER 500
D	ALA 7	SER 500
E	ALA 7	SER 500
F	ALA 7	SER 500
G	ALA 7	SER 500
H	ALA 7	SER 500

There are152 helices in PDB entry 1NZW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	55	71	Right-handed alpha
Helix 2	2	A	74	79	Right-handed alpha
Helix 3	3	A	80	98	Right-handed alpha
Helix 4	4	A	98	111	Right-handed alpha
Helix 5	5	A	113	120	Right-handed alpha
Helix 6	6	A	120	136	Right-handed alpha
Helix 7	7	A	170	185	Right-handed alpha
Helix 8	8	A	198	212	Right-handed alpha
Helix 9	9	A	227	235	Right-handed alpha
Helix 10	10	A	246	260	Right-handed alpha
Helix 11	11	A	282	296	Right-handed alpha
Helix 12	12	A	297	300	Right-handed 310
Helix 13	13	A	312	328	Right-handed alpha
Helix 14	14	A	346	363	Right-handed alpha
Helix 15	15	A	393	397	Right-handed 310
Helix 16	16	A	412	422	Right-handed alpha
Helix 17	17	A	435	446	Right-handed alpha
Helix 18	18	A	468	470	Right-handed 310
Helix 19	19	A	479	484	Right-handed 310
Helix 20	20	B	55	71	Right-handed alpha
Helix 21	21	B	74	79	Right-handed alpha
Helix 22	22	B	80	98	Right-handed alpha
Helix 23	23	B	98	111	Right-handed alpha
Helix 24	24	B	113	120	Right-handed alpha
Helix 25	25	B	120	136	Right-handed alpha
Helix 26	26	B	170	185	Right-handed alpha
Helix 27	27	B	198	212	Right-handed alpha
Helix 28	28	B	227	235	Right-handed alpha
Helix 29	29	B	246	260	Right-handed alpha
Helix 30	30	B	282	296	Right-handed alpha
Helix 31	31	B	297	300	Right-handed 310
Helix 32	32	B	312	328	Right-handed alpha
Helix 33	33	B	346	363	Right-handed alpha
Helix 34	34	B	393	398	Right-handed alpha
Helix 35	35	B	412	422	Right-handed alpha
Helix 36	36	B	435	446	Right-handed alpha
Helix 37	37	B	468	470	Right-handed 310
Helix 38	38	B	479	484	Right-handed 310
Helix 39	39	C	55	70	Right-handed alpha
Helix 40	40	C	74	79	Right-handed alpha
Helix 41	41	C	80	98	Right-handed alpha
Helix 42	42	C	98	111	Right-handed alpha
Helix 43	43	C	113	120	Right-handed alpha
Helix 44	44	C	120	136	Right-handed alpha
Helix 45	45	C	170	185	Right-handed alpha
Helix 46	46	C	198	212	Right-handed alpha
Helix 47	47	C	227	235	Right-handed alpha
Helix 48	48	C	246	260	Right-handed alpha
Helix 49	49	C	282	296	Right-handed alpha
Helix 50	50	C	297	300	Right-handed 310
Helix 51	51	C	312	329	Right-handed alpha
Helix 52	52	C	346	363	Right-handed alpha
Helix 53	53	C	393	397	Right-handed 310
Helix 54	54	C	412	422	Right-handed alpha
Helix 55	55	C	435	446	Right-handed alpha
Helix 56	56	C	468	470	Right-handed 310
Helix 57	57	C	478	484	Right-handed 310
Helix 58	58	D	55	70	Right-handed alpha
Helix 59	59	D	74	79	Right-handed alpha
Helix 60	60	D	80	98	Right-handed alpha
Helix 61	61	D	98	111	Right-handed alpha
Helix 62	62	D	113	120	Right-handed alpha
Helix 63	63	D	120	136	Right-handed alpha
Helix 64	64	D	170	185	Right-handed alpha
Helix 65	65	D	198	212	Right-handed alpha
Helix 66	66	D	227	234	Right-handed alpha
Helix 67	67	D	246	260	Right-handed alpha
Helix 68	68	D	282	296	Right-handed alpha
Helix 69	69	D	297	300	Right-handed 310
Helix 70	70	D	312	329	Right-handed alpha
Helix 71	71	D	346	363	Right-handed alpha
Helix 72	72	D	393	398	Right-handed alpha
Helix 73	73	D	412	422	Right-handed alpha
Helix 74	74	D	435	446	Right-handed alpha
Helix 75	75	D	468	470	Right-handed 310
Helix 76	76	D	479	484	Right-handed 310
Helix 77	77	E	55	70	Right-handed alpha
Helix 78	78	E	74	79	Right-handed alpha
Helix 79	79	E	80	98	Right-handed alpha
Helix 80	80	E	98	111	Right-handed alpha
Helix 81	81	E	113	120	Right-handed alpha
Helix 82	82	E	120	136	Right-handed alpha
Helix 83	83	E	170	185	Right-handed alpha
Helix 84	84	E	198	212	Right-handed alpha
Helix 85	85	E	227	234	Right-handed alpha
Helix 86	86	E	246	260	Right-handed alpha
Helix 87	87	E	282	296	Right-handed alpha
Helix 88	88	E	297	300	Right-handed 310
Helix 89	89	E	312	328	Right-handed alpha
Helix 90	90	E	346	363	Right-handed alpha
Helix 91	91	E	393	397	Right-handed 310
Helix 92	92	E	412	422	Right-handed alpha
Helix 93	93	E	435	446	Right-handed alpha
Helix 94	94	E	468	470	Right-handed 310
Helix 95	95	E	478	484	Right-handed 310
Helix 96	96	F	55	71	Right-handed alpha
Helix 97	97	F	74	79	Right-handed alpha
Helix 98	98	F	80	98	Right-handed alpha
Helix 99	99	F	98	111	Right-handed alpha
Helix 100	100	F	113	120	Right-handed alpha
Helix 101	101	F	120	136	Right-handed alpha
Helix 102	102	F	170	185	Right-handed alpha
Helix 103	103	F	198	212	Right-handed alpha
Helix 104	104	F	227	235	Right-handed alpha
Helix 105	105	F	246	260	Right-handed alpha
Helix 106	106	F	282	296	Right-handed alpha
Helix 107	107	F	297	300	Right-handed 310
Helix 108	108	F	312	329	Right-handed alpha
Helix 109	109	F	346	363	Right-handed alpha
Helix 110	110	F	393	397	Right-handed 310
Helix 111	111	F	412	422	Right-handed alpha
Helix 112	112	F	435	446	Right-handed alpha
Helix 113	113	F	468	470	Right-handed 310
Helix 114	114	F	478	484	Right-handed 310
Helix 115	115	G	55	70	Right-handed alpha
Helix 116	116	G	74	79	Right-handed alpha
Helix 117	117	G	80	98	Right-handed alpha
Helix 118	118	G	98	111	Right-handed alpha
Helix 119	119	G	113	120	Right-handed alpha
Helix 120	120	G	120	136	Right-handed alpha
Helix 121	121	G	170	185	Right-handed alpha
Helix 122	122	G	198	212	Right-handed alpha
Helix 123	123	G	227	235	Right-handed alpha
Helix 124	124	G	246	260	Right-handed alpha
Helix 125	125	G	282	296	Right-handed alpha
Helix 126	126	G	297	300	Right-handed 310
Helix 127	127	G	312	328	Right-handed alpha
Helix 128	128	G	346	363	Right-handed alpha
Helix 129	129	G	393	398	Right-handed alpha
Helix 130	130	G	412	422	Right-handed alpha
Helix 131	131	G	435	446	Right-handed alpha
Helix 132	132	G	468	470	Right-handed 310
Helix 133	133	G	479	484	Right-handed 310
Helix 134	134	H	55	71	Right-handed alpha
Helix 135	135	H	74	79	Right-handed alpha
Helix 136	136	H	80	98	Right-handed alpha
Helix 137	137	H	98	111	Right-handed alpha
Helix 138	138	H	113	120	Right-handed alpha
Helix 139	139	H	120	136	Right-handed alpha
Helix 140	140	H	170	185	Right-handed alpha
Helix 141	141	H	198	212	Right-handed alpha
Helix 142	142	H	227	235	Right-handed alpha
Helix 143	143	H	246	260	Right-handed alpha
Helix 144	144	H	282	296	Right-handed alpha
Helix 145	145	H	297	300	Right-handed 310
Helix 146	146	H	312	328	Right-handed alpha
Helix 147	147	H	346	363	Right-handed alpha
Helix 148	148	H	393	397	Right-handed 310
Helix 149	149	H	412	422	Right-handed alpha
Helix 150	150	H	435	446	Right-handed alpha
Helix 151	151	H	468	470	Right-handed 310
Helix 152	152	H	479	484	Right-handed 310

There are 28 sheets in PDB entry 1NZW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	27	29	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	47	52	anti-parallel

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There are 20 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	369	first strand
Strand 2	B	384	387	anti-parallel
Strand 3	B	404	410	parallel
Strand 4	B	307	311	parallel
Strand 5	B	274	277	parallel
Strand 6	B	428	432	parallel
Strand 7	B	450	453	parallel
Strand 8	A	486	494	parallel
Strand 9	A	150	158	anti-parallel
Strand 10	A	141	144	anti-parallel
Strand 11	D	141	144	anti-parallel
Strand 12	D	150	158	anti-parallel
Strand 13	D	486	494	anti-parallel
Strand 14	C	450	453	parallel
Strand 15	C	428	432	parallel
Strand 16	C	274	277	parallel
Strand 17	C	307	311	parallel
Strand 18	C	404	410	parallel
Strand 19	C	384	387	parallel
Strand 20	C	366	369	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	220	first strand
Strand 2	A	188	192	parallel
Strand 3	A	161	165	parallel
Strand 4	A	240	244	parallel
Strand 5	A	264	268	parallel
Strand 6	A	472	473	anti-parallel

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There are 20 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	369	first strand
Strand 2	A	384	387	anti-parallel
Strand 3	A	404	410	parallel
Strand 4	A	307	311	parallel
Strand 5	A	274	277	parallel
Strand 6	A	428	432	parallel
Strand 7	A	450	453	parallel
Strand 8	B	486	494	parallel
Strand 9	B	150	158	anti-parallel
Strand 10	B	141	144	anti-parallel
Strand 11	C	141	144	anti-parallel
Strand 12	C	150	158	anti-parallel
Strand 13	C	486	494	anti-parallel
Strand 14	D	450	453	parallel
Strand 15	D	428	432	parallel
Strand 16	D	274	277	parallel
Strand 17	D	307	311	parallel
Strand 18	D	404	410	parallel
Strand 19	D	384	387	parallel
Strand 20	D	366	369	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	27	29	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	B	47	52	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	220	first strand
Strand 2	B	188	192	parallel
Strand 3	B	161	165	parallel
Strand 4	B	240	244	parallel
Strand 5	B	264	268	parallel
Strand 6	B	472	473	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	C	27	29	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	40	first strand
Strand 2	C	47	52	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	220	first strand
Strand 2	C	188	192	parallel
Strand 3	C	161	165	parallel
Strand 4	C	240	244	parallel
Strand 5	C	264	268	parallel
Strand 6	C	472	473	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	24	first strand
Strand 2	D	27	29	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	40	first strand
Strand 2	D	47	52	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	220	first strand
Strand 2	D	188	192	parallel
Strand 3	D	161	165	parallel
Strand 4	D	240	244	parallel
Strand 5	D	264	268	parallel
Strand 6	D	472	473	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	24	first strand
Strand 2	E	27	29	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	40	first strand
Strand 2	E	47	52	anti-parallel

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There are 20 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	366	369	first strand
Strand 2	F	384	387	anti-parallel
Strand 3	F	404	410	parallel
Strand 4	F	307	311	parallel
Strand 5	F	274	277	parallel
Strand 6	F	428	432	parallel
Strand 7	F	450	453	parallel
Strand 8	E	486	494	parallel
Strand 9	E	150	158	anti-parallel
Strand 10	E	141	144	anti-parallel
Strand 11	H	141	144	anti-parallel
Strand 12	H	150	158	anti-parallel
Strand 13	H	486	494	anti-parallel
Strand 14	G	450	453	parallel
Strand 15	G	428	432	parallel
Strand 16	G	274	277	parallel
Strand 17	G	307	311	parallel
Strand 18	G	404	410	parallel
Strand 19	G	384	387	parallel
Strand 20	G	366	369	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	220	first strand
Strand 2	E	188	192	parallel
Strand 3	E	161	165	parallel
Strand 4	E	240	244	parallel
Strand 5	E	264	268	parallel
Strand 6	E	472	473	anti-parallel

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There are 20 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	366	369	first strand
Strand 2	E	384	387	anti-parallel
Strand 3	E	404	410	parallel
Strand 4	E	307	311	parallel
Strand 5	E	274	277	parallel
Strand 6	E	428	432	parallel
Strand 7	E	450	453	parallel
Strand 8	F	486	494	parallel
Strand 9	F	150	158	anti-parallel
Strand 10	F	141	144	anti-parallel
Strand 11	G	141	144	anti-parallel
Strand 12	G	150	158	anti-parallel
Strand 13	G	486	494	anti-parallel
Strand 14	H	450	453	parallel
Strand 15	H	428	432	parallel
Strand 16	H	274	277	parallel
Strand 17	H	307	311	parallel
Strand 18	H	404	410	parallel
Strand 19	H	384	387	parallel
Strand 20	H	366	369	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	24	first strand
Strand 2	F	27	29	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	40	first strand
Strand 2	F	47	52	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	218	220	first strand
Strand 2	F	188	192	parallel
Strand 3	F	161	165	parallel
Strand 4	F	240	244	parallel
Strand 5	F	264	268	parallel
Strand 6	F	472	473	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	24	first strand
Strand 2	G	27	29	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	40	first strand
Strand 2	G	47	52	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	218	220	first strand
Strand 2	G	188	192	parallel
Strand 3	G	161	165	parallel
Strand 4	G	240	244	parallel
Strand 5	G	264	268	parallel
Strand 6	G	472	473	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	24	first strand
Strand 2	H	27	29	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	40	first strand
Strand 2	H	47	52	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	218	220	first strand
Strand 2	H	188	192	parallel
Strand 3	H	161	165	parallel
Strand 4	H	240	244	parallel
Strand 5	H	264	268	parallel
Strand 6	H	472	473	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1NZW

Analysis of interatomic Contacts of Structural Units in PDB entry:
1NZW