Analysis of interatomic Contacts of Structural Units in PDB entry:
1NZY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NZY entry

There are 3 chains in PDB entry 1NZY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 269
B
 MET 1VAL 269
C
 MET 1VAL 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 1NZY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 23Right-handed 310
Helix 2
2
A
29 44Right-handed alpha
Helix 3
3
A
66 68Right-handed 310
Helix 4
4
A
74 98Right-handed alpha
Helix 5
5
A
113 121Right-handed 310
Helix 6
6
A
137 140Right-handed alpha
Helix 7
7
A
148 156Right-handed alpha
Helix 8
8
A
158 167Right-handed alpha
Helix 9
9
A
173 179Right-handed alpha
Helix 10
10
A
188 204Right-handed alpha
Helix 11
11
A
207 222Right-handed alpha
Helix 12
12
A
225 241Right-handed alpha
Helix 13
13
A
243 253Right-handed alpha
Helix 14
14
B
21 23Right-handed 310
Helix 15
15
B
29 44Right-handed alpha
Helix 16
16
B
66 68Right-handed 310
Helix 17
17
B
74 98Right-handed alpha
Helix 18
18
B
113 121Right-handed 310
Helix 19
19
B
137 140Right-handed alpha
Helix 20
20
B
148 156Right-handed alpha
Helix 21
21
B
158 167Right-handed alpha
Helix 22
22
B
173 179Right-handed alpha
Helix 23
23
B
188 204Right-handed alpha
Helix 24
24
B
207 222Right-handed alpha
Helix 25
25
B
225 241Right-handed alpha
Helix 26
26
B
244 254Right-handed alpha
Helix 27
27
C
21 23Right-handed 310
Helix 28
28
C
29 44Right-handed alpha
Helix 29
29
C
66 68Right-handed 310
Helix 30
30
C
74 98Right-handed alpha
Helix 31
31
C
113 121Right-handed 310
Helix 32
32
C
137 140Right-handed alpha
Helix 33
33
C
148 167Right-handed alpha
Helix 34
34
C
173 179Right-handed alpha
Helix 35
35
C
188 204Right-handed alpha
Helix 36
36
C
207 222Right-handed alpha
Helix 37
37
C
225 240Right-handed alpha
Helix 38
38
C
244 254Right-handed alpha
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There are 6 sheets in PDB entry 1NZY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
13 18anti-parallel
Strand 3
A
50 55parallel
Strand 4
A
102 107parallel
Strand 5
A
124 128parallel
Strand 6
A
184 186parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
132 134parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
13 18anti-parallel
Strand 3
B
50 55parallel
Strand 4
B
102 107parallel
Strand 5
B
124 128parallel
Strand 6
B
184 186parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 112first strand
Strand 2
B
132 134parallel
Strand 3
B
170 172anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 10first strand
Strand 2
C
13 18anti-parallel
Strand 3
C
50 55parallel
Strand 4
C
102 107parallel
Strand 5
C
124 128parallel
Strand 6
C
184 186parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 112first strand
Strand 2
C
132 134parallel
Strand 3
C
170 172anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il