Analysis of interatomic Contacts of Structural Units in PDB entry:
1O08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O08 entry

There is 1 chain in PDB entry 1O08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1001LYS 1221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1O08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1015 1031Right-handed alpha
Helix 2
2
A
1037 1042Right-handed alpha
Helix 3
3
A
1048 1058Right-handed alpha
Helix 4
4
A
1065 1084Right-handed alpha
Helix 5
5
A
1088 1092Right-handed 310
Helix 6
6
A
1095 1106Right-handed alpha
Helix 7
7
A
1118 1126Right-handed alpha
Helix 8
8
A
1128 1132Right-handed 310
Helix 9
9
A
1148 1158Right-handed alpha
Helix 10
10
A
1161 1163Right-handed 310
Helix 11
11
A
1171 1182Right-handed alpha
Helix 12
12
A
1190 1195Right-handed alpha
Helix 13
13
A
1203 1207Right-handed 310
Helix 14
14
A
1208 1218Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1O08.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1134 1135first strand
Strand 2
A
1109 1112parallel
Strand 3
A
1004 1007parallel
Strand 4
A
1165 1169parallel
Strand 5
A
1184 1188parallel
Strand 6
A
1199 1201parallel
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