Analysis of interatomic Contacts of Structural Units in PDB entry:
1O17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O17 entry

There are 4 chains in PDB entry 1O17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 343
B
 MET 1SER 343
C
 MET 1GLY 345
D
 MET 1GLY 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 1O17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
17 30Right-handed alpha
Helix 3
3
A
34 49Right-handed alpha
Helix 4
4
A
51 66Right-handed alpha
Helix 5
5
A
89 99Right-handed alpha
Helix 6
6
A
117 126Right-handed alpha
Helix 7
7
A
132 144Right-handed alpha
Helix 8
8
A
150 154Right-handed alpha
Helix 9
9
A
155 159Right-handed 310
Helix 10
10
A
160 168Right-handed alpha
Helix 11
11
A
171 180Right-handed 310
Helix 12
12
A
194 206Right-handed alpha
Helix 13
13
A
249 252Right-handed 310
Helix 14
14
A
257 261Right-handed 310
Helix 15
15
A
265 278Right-handed alpha
Helix 16
16
A
281 299Right-handed alpha
Helix 17
17
A
304 317Right-handed alpha
Helix 18
18
A
318 330Right-handed alpha
Helix 19
19
A
332 341Right-handed alpha
Helix 20
20
B
2 12Right-handed alpha
Helix 21
21
B
17 31Right-handed alpha
Helix 22
22
B
34 49Right-handed alpha
Helix 23
23
B
51 65Right-handed alpha
Helix 24
24
B
89 99Right-handed alpha
Helix 25
25
B
117 126Right-handed alpha
Helix 26
26
B
132 144Right-handed alpha
Helix 27
27
B
150 154Right-handed alpha
Helix 28
28
B
155 159Right-handed 310
Helix 29
29
B
160 168Right-handed alpha
Helix 30
30
B
171 181Right-handed 310
Helix 31
31
B
194 206Right-handed alpha
Helix 32
32
B
249 252Right-handed 310
Helix 33
33
B
257 261Right-handed 310
Helix 34
34
B
265 279Right-handed alpha
Helix 35
35
B
281 299Right-handed alpha
Helix 36
36
B
304 317Right-handed alpha
Helix 37
37
B
318 328Right-handed alpha
Helix 38
38
B
334 343Right-handed alpha
Helix 39
39
C
2 12Right-handed alpha
Helix 40
40
C
17 30Right-handed alpha
Helix 41
41
C
34 49Right-handed alpha
Helix 42
42
C
51 66Right-handed alpha
Helix 43
43
C
89 100Right-handed alpha
Helix 44
44
C
117 125Right-handed alpha
Helix 45
45
C
132 144Right-handed alpha
Helix 46
46
C
150 154Right-handed alpha
Helix 47
47
C
155 159Right-handed 310
Helix 48
48
C
160 168Right-handed alpha
Helix 49
49
C
171 180Right-handed 310
Helix 50
50
C
194 207Right-handed alpha
Helix 51
51
C
249 252Right-handed 310
Helix 52
52
C
257 262Right-handed 310
Helix 53
53
C
265 278Right-handed alpha
Helix 54
54
C
281 299Right-handed alpha
Helix 55
55
C
304 330Right-handed alpha
Helix 56
56
C
332 343Right-handed alpha
Helix 57
57
D
2 12Right-handed alpha
Helix 58
58
D
17 30Right-handed alpha
Helix 59
59
D
34 49Right-handed alpha
Helix 60
60
D
51 66Right-handed alpha
Helix 61
61
D
89 99Right-handed alpha
Helix 62
62
D
117 126Right-handed alpha
Helix 63
63
D
132 144Right-handed alpha
Helix 64
64
D
150 154Right-handed alpha
Helix 65
65
D
157 168Right-handed alpha
Helix 66
66
D
172 177Right-handed alpha
Helix 67
67
D
178 180Right-handed 310
Helix 68
68
D
194 207Right-handed alpha
Helix 69
69
D
249 252Right-handed 310
Helix 70
70
D
257 262Right-handed 310
Helix 71
71
D
265 278Right-handed alpha
Helix 72
72
D
281 299Right-handed alpha
Helix 73
73
D
304 317Right-handed alpha
Helix 74
74
D
318 330Right-handed alpha
Helix 75
75
D
332 341Right-handed alpha
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There are 8 sheets in PDB entry 1O17. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
187 191parallel
Strand 3
A
212 218parallel
Strand 4
A
230 237anti-parallel
Strand 5
A
240 247anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 108first strand
Strand 2
A
145 149parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
187 191parallel
Strand 3
B
212 218parallel
Strand 4
B
230 237anti-parallel
Strand 5
B
240 247anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 108first strand
Strand 2
B
145 149parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 76first strand
Strand 2
C
187 191parallel
Strand 3
C
212 218parallel
Strand 4
C
230 237anti-parallel
Strand 5
C
241 247anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 108first strand
Strand 2
C
145 149parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
75 76first strand
Strand 2
D
187 191parallel
Strand 3
D
212 218parallel
Strand 4
D
230 237anti-parallel
Strand 5
D
240 247anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
104 108first strand
Strand 2
D
145 149parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il