Analysis of interatomic Contacts of Structural Units in PDB entry:
1O60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O60 entry

There are 4 chains in PDB entry 1O60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2THR 282
B
 GLN 2THR 282
C
 GLN 2THR 282
D
 GLN 2THR 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 1O60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 49Right-handed alpha
Helix 2
2
A
73 89Right-handed alpha
Helix 3
3
A
98 100Right-handed 310
Helix 4
4
A
101 107Right-handed alpha
Helix 5
5
A
115 119Right-handed 310
Helix 6
6
A
121 131Right-handed alpha
Helix 7
7
A
144 146Right-handed 310
Helix 8
8
A
147 158Right-handed alpha
Helix 9
9
A
182 191Right-handed alpha
Helix 10
10
A
200 204Right-handed alpha
Helix 11
11
A
220 232Right-handed alpha
Helix 12
12
A
243 247Right-handed 310
Helix 13
13
A
259 277Right-handed alpha
Helix 14
14
B
30 49Right-handed alpha
Helix 15
15
B
72 89Right-handed alpha
Helix 16
16
B
98 100Right-handed 310
Helix 17
17
B
101 107Right-handed alpha
Helix 18
18
B
115 119Right-handed 310
Helix 19
19
B
121 131Right-handed alpha
Helix 20
20
B
144 146Right-handed 310
Helix 21
21
B
147 158Right-handed alpha
Helix 22
22
B
182 191Right-handed alpha
Helix 23
23
B
200 204Right-handed alpha
Helix 24
24
B
220 232Right-handed alpha
Helix 25
25
B
243 247Right-handed 310
Helix 26
26
B
259 277Right-handed alpha
Helix 27
27
C
30 49Right-handed alpha
Helix 28
28
C
72 89Right-handed alpha
Helix 29
29
C
98 100Right-handed 310
Helix 30
30
C
101 107Right-handed alpha
Helix 31
31
C
115 119Right-handed 310
Helix 32
32
C
121 131Right-handed alpha
Helix 33
33
C
144 146Right-handed 310
Helix 34
34
C
147 158Right-handed alpha
Helix 35
35
C
182 191Right-handed alpha
Helix 36
36
C
201 204Right-handed 310
Helix 37
37
C
220 232Right-handed alpha
Helix 38
38
C
243 247Right-handed 310
Helix 39
39
C
259 277Right-handed alpha
Helix 40
40
D
30 49Right-handed alpha
Helix 41
41
D
73 89Right-handed alpha
Helix 42
42
D
98 100Right-handed 310
Helix 43
43
D
101 107Right-handed alpha
Helix 44
44
D
115 119Right-handed 310
Helix 45
45
D
121 130Right-handed alpha
Helix 46
46
D
144 146Right-handed 310
Helix 47
47
D
147 157Right-handed alpha
Helix 48
48
D
182 191Right-handed alpha
Helix 49
49
D
200 204Right-handed alpha
Helix 50
50
D
220 232Right-handed alpha
Helix 51
51
D
243 247Right-handed 310
Helix 52
52
D
259 277Right-handed alpha
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There are 12 sheets in PDB entry 1O60. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
11 13anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
235 241parallel
Strand 3
A
196 199parallel
Strand 4
A
163 167parallel
Strand 5
A
134 138parallel
Strand 6
A
111 114parallel
Strand 7
A
91 95parallel
Strand 8
A
52 57parallel
Strand 9
A
20 27parallel
Strand 10
A
235 241parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
177 178anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
11 13anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 256first strand
Strand 2
B
235 241parallel
Strand 3
B
196 199parallel
Strand 4
B
163 167parallel
Strand 5
B
134 138parallel
Strand 6
B
111 114parallel
Strand 7
B
91 95parallel
Strand 8
B
52 57parallel
Strand 9
B
20 27parallel
Strand 10
B
235 241parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
177 178anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 8first strand
Strand 2
C
11 13anti-parallel
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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
255 256first strand
Strand 2
C
235 241parallel
Strand 3
C
196 199parallel
Strand 4
C
163 167parallel
Strand 5
C
134 138parallel
Strand 6
C
111 114parallel
Strand 7
C
91 95parallel
Strand 8
C
52 57parallel
Strand 9
C
20 27parallel
Strand 10
C
235 241parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 171first strand
Strand 2
C
177 178anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 8first strand
Strand 2
D
11 13anti-parallel
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There are 10 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
255 256first strand
Strand 2
D
235 241parallel
Strand 3
D
196 199parallel
Strand 4
D
163 167parallel
Strand 5
D
134 138parallel
Strand 6
D
111 114parallel
Strand 7
D
91 95parallel
Strand 8
D
52 57parallel
Strand 9
D
20 27parallel
Strand 10
D
235 241parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
170 171first strand
Strand 2
D
177 178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il