Analysis of interatomic Contacts of Structural Units in PDB entry:
1O65


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O65 entry

There are 3 chains in PDB entry 1O65 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLU 235
B
 LYS 3GLY 233
C
 LYS 3GLY 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1O65. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 10Right-handed 310
Helix 2
2
A
61 66Right-handed 310
Helix 3
3
A
72 82Right-handed alpha
Helix 4
4
A
83 89Right-handed 310
Helix 5
5
A
131 137Right-handed alpha
Helix 6
6
A
141 150Right-handed alpha
Helix 7
7
A
180 190Right-handed alpha
Helix 8
8
A
194 203Right-handed alpha
Helix 9
9
A
208 222Right-handed alpha
Helix 10
10
A
227 233Right-handed alpha
Helix 11
11
B
6 10Right-handed 310
Helix 12
12
B
62 66Right-handed 310
Helix 13
13
B
72 82Right-handed alpha
Helix 14
14
B
83 89Right-handed 310
Helix 15
15
B
131 137Right-handed alpha
Helix 16
16
B
141 150Right-handed alpha
Helix 17
17
B
180 190Right-handed alpha
Helix 18
18
B
194 203Right-handed alpha
Helix 19
19
B
208 222Right-handed alpha
Helix 20
20
B
227 232Right-handed alpha
Helix 21
21
C
4 10Right-handed 310
Helix 22
22
C
62 66Right-handed 310
Helix 23
23
C
72 82Right-handed alpha
Helix 24
24
C
83 89Right-handed 310
Helix 25
25
C
131 138Right-handed alpha
Helix 26
26
C
141 150Right-handed alpha
Helix 27
27
C
180 190Right-handed alpha
Helix 28
28
C
194 204Right-handed alpha
Helix 29
29
C
208 222Right-handed alpha
Helix 30
30
C
227 233Right-handed alpha
Helix 31
31
C
234 236Right-handed 310
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There are 6 sheets in PDB entry 1O65. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
170 174anti-parallel
Strand 3
A
113 116anti-parallel
Strand 4
A
119 126anti-parallel
Strand 5
A
154 160anti-parallel
Strand 6
A
67 71anti-parallel
Strand 7
A
98 100parallel
Strand 8
A
16 19anti-parallel
Strand 9
A
36 38anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
41 45anti-parallel
Strand 3
A
162 165anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
170 174anti-parallel
Strand 3
B
113 116anti-parallel
Strand 4
B
119 126anti-parallel
Strand 5
B
154 160anti-parallel
Strand 6
B
67 71anti-parallel
Strand 7
B
98 100parallel
Strand 8
B
16 19anti-parallel
Strand 9
B
36 38anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
162 165anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
170 174anti-parallel
Strand 3
C
113 116anti-parallel
Strand 4
C
119 126anti-parallel
Strand 5
C
154 160anti-parallel
Strand 6
C
67 71anti-parallel
Strand 7
C
98 100parallel
Strand 8
C
16 19anti-parallel
Strand 9
C
36 37anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 49first strand
Strand 2
C
41 45anti-parallel
Strand 3
C
162 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il