Analysis of interatomic Contacts of Structural Units in PDB entry:
1O6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O6E entry

There are 2 chains in PDB entry 1O6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4ALA 235
B
 ALA 4ALA 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1O6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 36Right-handed alpha
Helix 2
2
A
75 80Right-handed alpha
Helix 3
3
A
80 87Right-handed alpha
Helix 4
4
A
89 94Right-handed alpha
Helix 5
5
A
102 112Right-handed alpha
Helix 6
6
A
158 165Right-handed alpha
Helix 7
7
A
170 185Right-handed alpha
Helix 8
8
A
197 208Right-handed alpha
Helix 9
9
A
213 225Right-handed alpha
Helix 10
10
B
28 36Right-handed alpha
Helix 11
11
B
75 80Right-handed alpha
Helix 12
12
B
80 87Right-handed alpha
Helix 13
13
B
89 94Right-handed alpha
Helix 14
14
B
102 112Right-handed alpha
Helix 15
15
B
158 165Right-handed alpha
Helix 16
16
B
170 185Right-handed alpha
Helix 17
17
B
197 208Right-handed alpha
Helix 18
18
B
214 225Right-handed alpha
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There are 2 sheets in PDB entry 1O6E. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 120first strand
Strand 2
A
136 143anti-parallel
Strand 3
A
42 46parallel
Strand 4
A
49 62anti-parallel
Strand 5
A
67 73anti-parallel
Strand 6
A
7 14anti-parallel
Strand 7
A
154 156anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 120first strand
Strand 2
B
136 143anti-parallel
Strand 3
B
42 46parallel
Strand 4
B
49 61anti-parallel
Strand 5
B
67 73anti-parallel
Strand 6
B
7 14anti-parallel
Strand 7
B
154 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il