Analysis of interatomic Contacts of Structural Units in PDB entry:
1O6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O6U entry

There are 3 chains in PDB entry 1O6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLY 398
C
 MSE 1GLN 396
E
 MSE 1LEU 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 1O6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 23Right-handed alpha
Helix 2
2
A
24 30Right-handed 310
Helix 3
3
A
34 45Right-handed alpha
Helix 4
4
A
48 67Right-handed alpha
Helix 5
5
A
68 74Right-handed 310
Helix 6
6
A
77 84Right-handed alpha
Helix 7
7
A
107 115Right-handed alpha
Helix 8
8
A
116 143Right-handed alpha
Helix 9
9
A
159 163Right-handed 310
Helix 10
10
A
164 182Right-handed alpha
Helix 11
11
A
197 206Right-handed alpha
Helix 12
12
A
207 209Right-handed 310
Helix 13
13
A
210 216Right-handed alpha
Helix 14
14
A
223 229Right-handed alpha
Helix 15
15
A
233 237Right-handed 310
Helix 16
16
A
239 242Right-handed 310
Helix 17
17
A
265 269Right-handed 310
Helix 18
18
A
329 333Right-handed 310
Helix 19
19
A
387 397Right-handed alpha
Helix 20
20
C
9 23Right-handed alpha
Helix 21
21
C
26 30Right-handed 310
Helix 22
22
C
34 45Right-handed alpha
Helix 23
23
C
48 66Right-handed alpha
Helix 24
24
C
67 74Right-handed 310
Helix 25
25
C
77 84Right-handed alpha
Helix 26
26
C
107 115Right-handed alpha
Helix 27
27
C
116 143Right-handed alpha
Helix 28
28
C
159 163Right-handed 310
Helix 29
29
C
164 182Right-handed alpha
Helix 30
30
C
197 206Right-handed alpha
Helix 31
31
C
207 209Right-handed 310
Helix 32
32
C
210 216Right-handed alpha
Helix 33
33
C
223 229Right-handed alpha
Helix 34
34
C
233 237Right-handed 310
Helix 35
35
C
239 242Right-handed 310
Helix 36
36
C
265 269Right-handed 310
Helix 37
37
C
387 395Right-handed alpha
Helix 38
38
E
9 23Right-handed alpha
Helix 39
39
E
24 30Right-handed 310
Helix 40
40
E
34 45Right-handed alpha
Helix 41
41
E
48 66Right-handed alpha
Helix 42
42
E
67 71Right-handed 310
Helix 43
43
E
77 84Right-handed alpha
Helix 44
44
E
107 115Right-handed alpha
Helix 45
45
E
116 143Right-handed alpha
Helix 46
46
E
159 163Right-handed 310
Helix 47
47
E
164 182Right-handed alpha
Helix 48
48
E
197 206Right-handed alpha
Helix 49
49
E
207 209Right-handed 310
Helix 50
50
E
210 216Right-handed alpha
Helix 51
51
E
223 229Right-handed alpha
Helix 52
52
E
233 237Right-handed 310
Helix 53
53
E
239 242Right-handed 310
Helix 54
54
E
265 269Right-handed 310
Helix 55
55
E
387 396Right-handed alpha
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There are 9 sheets in PDB entry 1O6U. Click on sheet of interest to get list of strands forming it: AA, AB, AC, CA, CB, CC, EA, EB, EC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
97 102anti-parallel
Strand 3
A
149 154parallel
Strand 4
A
186 192parallel
Strand 5
A
217 219parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 284first strand
Strand 2
A
375 384anti-parallel
Strand 3
A
301 309anti-parallel
Strand 4
A
349 355anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 296first strand
Strand 2
A
359 366anti-parallel
Strand 3
A
314 320anti-parallel
Strand 4
A
334 342anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 91first strand
Strand 2
C
97 102anti-parallel
Strand 3
C
149 154parallel
Strand 4
C
186 192parallel
Strand 5
C
217 219parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
280 283first strand
Strand 2
C
376 384anti-parallel
Strand 3
C
302 310anti-parallel
Strand 4
C
349 354anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 296first strand
Strand 2
C
359 366anti-parallel
Strand 3
C
314 321anti-parallel
Strand 4
C
333 342anti-parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
87 91first strand
Strand 2
E
97 102anti-parallel
Strand 3
E
149 154parallel
Strand 4
E
186 192parallel
Strand 5
E
217 219parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
280 284first strand
Strand 2
E
375 384anti-parallel
Strand 3
E
301 309anti-parallel
Strand 4
E
349 355anti-parallel
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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
289 296first strand
Strand 2
E
359 366anti-parallel
Strand 3
E
314 320anti-parallel
Strand 4
E
334 342anti-parallel
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