Analysis of interatomic Contacts of Structural Units in PDB entry:
1O79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O79 entry

There are 3 chains in PDB entry 1O79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10GLU 629
B
 ALA 10GLU 629
C
 ALA 10GLU 629
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 99 helices in PDB entry 1O79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 26Right-handed alpha
Helix 2
2
A
40 53Right-handed alpha
Helix 3
3
A
57 72Right-handed alpha
Helix 4
4
A
87 102Right-handed alpha
Helix 5
5
A
107 120Right-handed alpha
Helix 6
6
A
121 126Right-handed 310
Helix 7
7
A
127 137Right-handed alpha
Helix 8
8
A
141 145Right-handed 310
Helix 9
9
A
149 155Right-handed 310
Helix 10
10
A
162 166Right-handed 310
Helix 11
11
A
167 184Right-handed alpha
Helix 12
12
A
190 194Right-handed 310
Helix 13
13
A
195 199Right-handed 310
Helix 14
14
A
215 229Right-handed alpha
Helix 15
15
A
236 252Right-handed alpha
Helix 16
16
A
261 275Right-handed alpha
Helix 17
17
A
280 289Right-handed alpha
Helix 18
18
A
290 292Right-handed 310
Helix 19
19
A
309 325Right-handed alpha
Helix 20
20
A
330 344Right-handed alpha
Helix 21
21
A
349 354Right-handed 310
Helix 22
22
A
374 387Right-handed alpha
Helix 23
23
A
392 409Right-handed alpha
Helix 24
24
A
428 432Right-handed 310
Helix 25
25
A
445 460Right-handed alpha
Helix 26
26
A
465 479Right-handed alpha
Helix 27
27
A
492 507Right-handed alpha
Helix 28
28
A
513 525Right-handed alpha
Helix 29
29
A
536 541Right-handed 310
Helix 30
30
A
542 546Right-handed 310
Helix 31
31
A
552 566Right-handed alpha
Helix 32
32
A
571 585Right-handed alpha
Helix 33
33
A
611 627Right-handed alpha
Helix 34
34
B
11 26Right-handed alpha
Helix 35
35
B
40 53Right-handed alpha
Helix 36
36
B
57 72Right-handed alpha
Helix 37
37
B
87 102Right-handed alpha
Helix 38
38
B
107 119Right-handed alpha
Helix 39
39
B
120 126Right-handed 310
Helix 40
40
B
127 137Right-handed alpha
Helix 41
41
B
141 145Right-handed 310
Helix 42
42
B
149 155Right-handed 310
Helix 43
43
B
162 166Right-handed 310
Helix 44
44
B
167 184Right-handed alpha
Helix 45
45
B
190 194Right-handed 310
Helix 46
46
B
195 199Right-handed 310
Helix 47
47
B
215 229Right-handed alpha
Helix 48
48
B
236 252Right-handed alpha
Helix 49
49
B
261 275Right-handed alpha
Helix 50
50
B
280 289Right-handed alpha
Helix 51
51
B
290 292Right-handed 310
Helix 52
52
B
309 325Right-handed alpha
Helix 53
53
B
330 344Right-handed alpha
Helix 54
54
B
349 354Right-handed 310
Helix 55
55
B
374 386Right-handed alpha
Helix 56
56
B
392 410Right-handed alpha
Helix 57
57
B
428 432Right-handed 310
Helix 58
58
B
445 460Right-handed alpha
Helix 59
59
B
465 479Right-handed alpha
Helix 60
60
B
492 507Right-handed alpha
Helix 61
61
B
513 526Right-handed alpha
Helix 62
62
B
536 541Right-handed 310
Helix 63
63
B
542 546Right-handed 310
Helix 64
64
B
552 566Right-handed alpha
Helix 65
65
B
571 585Right-handed alpha
Helix 66
66
B
611 627Right-handed alpha
Helix 67
67
C
11 26Right-handed alpha
Helix 68
68
C
40 53Right-handed alpha
Helix 69
69
C
57 72Right-handed alpha
Helix 70
70
C
87 102Right-handed alpha
Helix 71
71
C
107 120Right-handed alpha
Helix 72
72
C
121 126Right-handed 310
Helix 73
73
C
127 137Right-handed alpha
Helix 74
74
C
141 145Right-handed 310
Helix 75
75
C
149 155Right-handed 310
Helix 76
76
C
162 166Right-handed 310
Helix 77
77
C
167 184Right-handed alpha
Helix 78
78
C
190 194Right-handed 310
Helix 79
79
C
195 199Right-handed 310
Helix 80
80
C
215 229Right-handed alpha
Helix 81
81
C
236 251Right-handed alpha
Helix 82
82
C
261 275Right-handed alpha
Helix 83
83
C
280 289Right-handed alpha
Helix 84
84
C
289 293Right-handed alpha
Helix 85
85
C
309 325Right-handed alpha
Helix 86
86
C
330 344Right-handed alpha
Helix 87
87
C
349 354Right-handed 310
Helix 88
88
C
374 386Right-handed alpha
Helix 89
89
C
392 410Right-handed alpha
Helix 90
90
C
428 432Right-handed 310
Helix 91
91
C
445 460Right-handed alpha
Helix 92
92
C
465 479Right-handed alpha
Helix 93
93
C
492 507Right-handed alpha
Helix 94
94
C
513 525Right-handed alpha
Helix 95
95
C
536 541Right-handed 310
Helix 96
96
C
542 546Right-handed 310
Helix 97
97
C
552 566Right-handed alpha
Helix 98
98
C
571 585Right-handed alpha
Helix 99
99
C
611 627Right-handed alpha
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There are 6 sheets in PDB entry 1O79. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
605 609anti-parallel
Strand 3
A
598 601anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
302 304anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 37first strand
Strand 2
B
605 609anti-parallel
Strand 3
B
598 601anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
302 304anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 37first strand
Strand 2
C
605 609anti-parallel
Strand 3
C
598 601anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
294 296first strand
Strand 2
C
302 304anti-parallel
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