Analysis of interatomic Contacts of Structural Units in PDB entry:
1O87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O87 entry

There are 2 chains in PDB entry 1O87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 295
B
 MET 1GLY 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1O87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 15Right-handed alpha
Helix 2
2
A
23 41Right-handed alpha
Helix 3
3
A
44 62Right-handed alpha
Helix 4
4
A
69 86Right-handed alpha
Helix 5
5
A
110 125Right-handed alpha
Helix 6
6
A
140 153Right-handed alpha
Helix 7
7
A
164 179Right-handed alpha
Helix 8
8
A
195 210Right-handed alpha
Helix 9
9
A
223 238Right-handed 310
Helix 10
10
A
253 264Right-handed alpha
Helix 11
11
A
283 292Right-handed alpha
Helix 12
12
B
2 15Right-handed alpha
Helix 13
13
B
23 41Right-handed alpha
Helix 14
14
B
44 62Right-handed alpha
Helix 15
15
B
69 87Right-handed alpha
Helix 16
16
B
110 125Right-handed alpha
Helix 17
17
B
138 153Right-handed alpha
Helix 18
18
B
164 179Right-handed alpha
Helix 19
19
B
195 210Right-handed alpha
Helix 20
20
B
223 237Right-handed 310
Helix 21
21
B
253 264Right-handed alpha
Helix 22
22
B
283 292Right-handed alpha
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There are 2 sheets in PDB entry 1O87. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
129 133parallel
Strand 3
A
183 187parallel
Strand 4
A
99 104parallel
Strand 5
A
213 219parallel
Strand 6
A
241 245parallel
Strand 7
A
267 271parallel
Strand 8
A
279 281anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
129 133parallel
Strand 3
B
183 187parallel
Strand 4
B
99 104parallel
Strand 5
B
213 219parallel
Strand 6
B
241 245parallel
Strand 7
B
267 271parallel
Strand 8
B
279 281anti-parallel
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