Analysis of interatomic Contacts of Structural Units in PDB entry:
1O89


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O89 entry

There is 1 chain in PDB entry 1O89 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1VAL 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 1O89. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
40 49Right-handed alpha
Helix 3
3
A
105 109Right-handed 310
Helix 4
4
A
117 141Right-handed alpha
Helix 5
5
A
144 148Right-handed 310
Helix 6
6
A
157 170Right-handed alpha
Helix 7
7
A
180 182Right-handed 310
Helix 8
8
A
183 191Right-handed alpha
Helix 9
9
A
199 201Right-handed 310
Helix 10
10
A
220 230Right-handed alpha
Helix 11
11
A
252 259Right-handed alpha
Helix 12
12
A
271 286Right-handed alpha
Helix 13
13
A
287 292Right-handed alpha
Helix 14
14
A
302 312Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1O89. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
14 19anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
30 38anti-parallel
Strand 3
A
64 72anti-parallel
Strand 4
A
82 86anti-parallel
Strand 5
A
110 111anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
30 38anti-parallel
Strand 3
A
319 322anti-parallel
Strand 4
A
296 298parallel
Back to list of sheets
Back to top of page

There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 197first strand
Strand 2
A
174 178parallel
Strand 3
A
149 152parallel
Strand 4
A
212 217parallel
Strand 5
A
231 239parallel
Strand 6
A
261 264parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il