Analysis of interatomic Contacts of Structural Units in PDB entry:
1O8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O8Q entry

There are 8 chains in PDB entry 1O8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5GLY 164
B
 GLU 5GLY 164
C
 GLU 5GLY 164
D
 GLU 5GLY 164
E
 GLU 5GLY 164
F
 GLU 5GLY 164
G
 GLU 5GLY 164
H
 GLU 5GLY 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 1O8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
2
A
25 36Right-handed alpha
Helix 2
3
A
55 69Right-handed alpha
Helix 3
4
A
88 97Right-handed alpha
Helix 4
5
A
101 116Right-handed alpha
Helix 5
6
A
117 122Right-handed 310
Helix 6
7
A
142 163Right-handed alpha
Helix 7
8
B
14 19Right-handed alpha
Helix 8
9
B
26 36Right-handed alpha
Helix 9
10
B
55 69Right-handed alpha
Helix 10
11
B
88 97Right-handed alpha
Helix 11
12
B
101 116Right-handed alpha
Helix 12
13
B
117 122Right-handed 310
Helix 13
14
B
142 162Right-handed alpha
Helix 14
15
C
14 19Right-handed alpha
Helix 15
16
C
25 36Right-handed alpha
Helix 16
17
C
55 69Right-handed alpha
Helix 17
18
C
88 97Right-handed alpha
Helix 18
19
C
101 116Right-handed alpha
Helix 19
20
C
117 122Right-handed 310
Helix 20
21
C
142 163Right-handed alpha
Helix 21
22
D
14 19Right-handed alpha
Helix 22
23
D
25 36Right-handed alpha
Helix 23
24
D
55 69Right-handed alpha
Helix 24
25
D
88 97Right-handed alpha
Helix 25
26
D
101 116Right-handed alpha
Helix 26
27
D
117 122Right-handed 310
Helix 27
28
D
142 163Right-handed alpha
Helix 28
29
E
14 19Right-handed alpha
Helix 29
30
E
26 36Right-handed alpha
Helix 30
31
E
55 69Right-handed alpha
Helix 31
32
E
88 97Right-handed alpha
Helix 32
33
E
101 116Right-handed alpha
Helix 33
34
E
117 122Right-handed 310
Helix 34
35
E
142 162Right-handed alpha
Helix 35
36
F
14 19Right-handed alpha
Helix 36
37
F
25 36Right-handed alpha
Helix 37
38
F
55 69Right-handed alpha
Helix 38
39
F
88 97Right-handed alpha
Helix 39
40
F
101 116Right-handed alpha
Helix 40
41
F
117 122Right-handed 310
Helix 41
42
F
142 163Right-handed alpha
Helix 42
43
G
14 19Right-handed alpha
Helix 43
44
G
25 36Right-handed alpha
Helix 44
45
G
55 69Right-handed alpha
Helix 45
46
G
88 97Right-handed alpha
Helix 46
47
G
101 116Right-handed alpha
Helix 47
48
G
117 122Right-handed 310
Helix 48
49
G
142 163Right-handed alpha
Helix 49
50
H
14 19Right-handed alpha
Helix 50
51
H
25 36Right-handed alpha
Helix 51
52
H
55 69Right-handed alpha
Helix 52
53
H
88 97Right-handed alpha
Helix 53
54
H
101 116Right-handed alpha
Helix 54
55
H
117 122Right-handed 310
Helix 55
56
H
142 162Right-handed alpha
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There are 8 sheets in PDB entry 1O8Q. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 52first strand
Strand 2
A
6 13parallel
Strand 3
A
74 78parallel
Strand 4
A
132 137parallel
Strand 5
A
126 129anti-parallel
Strand 6
A
99 100anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 52first strand
Strand 2
B
6 13parallel
Strand 3
B
74 78parallel
Strand 4
B
132 137parallel
Strand 5
B
126 129anti-parallel
Strand 6
B
99 100anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 52first strand
Strand 2
C
6 13parallel
Strand 3
C
74 78parallel
Strand 4
C
132 137parallel
Strand 5
C
126 129anti-parallel
Strand 6
C
99 100anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 52first strand
Strand 2
D
6 13parallel
Strand 3
D
74 78parallel
Strand 4
D
132 137parallel
Strand 5
D
126 129anti-parallel
Strand 6
D
99 100anti-parallel
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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
44 52first strand
Strand 2
E
6 13parallel
Strand 3
E
74 78parallel
Strand 4
E
132 137parallel
Strand 5
E
126 129anti-parallel
Strand 6
E
99 100anti-parallel
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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
44 52first strand
Strand 2
F
6 13parallel
Strand 3
F
74 78parallel
Strand 4
F
132 137parallel
Strand 5
F
126 129anti-parallel
Strand 6
F
99 100anti-parallel
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There are 6 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
44 52first strand
Strand 2
G
6 13parallel
Strand 3
G
74 78parallel
Strand 4
G
132 137parallel
Strand 5
G
126 129anti-parallel
Strand 6
G
99 100anti-parallel
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There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
44 52first strand
Strand 2
H
6 13parallel
Strand 3
H
74 78parallel
Strand 4
H
132 137parallel
Strand 5
H
126 129anti-parallel
Strand 6
H
99 100anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il