Analysis of interatomic Contacts of Structural Units in PDB entry:
1OB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OB0 entry

There is 1 chain in PDB entry 1OB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3ARG 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1OB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 35Right-handed alpha
Helix 2
2
A
79 93Right-handed alpha
Helix 3
3
A
156 158Right-handed 310
Helix 4
4
A
205 224Right-handed alpha
Helix 5
5
A
232 236Right-handed 310
Helix 6
6
A
237 253Right-handed alpha
Helix 7
7
A
266 277Right-handed alpha
Helix 8
8
A
285 298Right-handed alpha
Helix 9
9
A
303 309Right-handed 310
Helix 10
10
A
311 316Right-handed alpha
Helix 11
11
A
343 354Right-handed alpha
Helix 12
12
A
363 368Right-handed alpha
Helix 13
13
A
380 394Right-handed alpha
Helix 14
14
A
441 445Right-handed 310
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There are 4 sheets in PDB entry 1OB0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
39 42parallel
Strand 3
A
96 101parallel
Strand 4
A
227 230parallel
Strand 5
A
257 260parallel
Strand 6
A
282 284parallel
Strand 7
A
320 323parallel
Strand 8
A
358 362parallel
Strand 9
A
7 9parallel
Strand 10
A
7 9first strand
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
199 201anti-parallel
Strand 3
A
160 163anti-parallel
Strand 4
A
175 177anti-parallel
Strand 5
A
111 121anti-parallel
Strand 6
A
124 128anti-parallel
Strand 7
A
111 121anti-parallel
Strand 8
A
133 140anti-parallel
Strand 9
A
111 121anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 402first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
424 429anti-parallel
Strand 4
A
477 482anti-parallel
Strand 5
A
448 451anti-parallel
Strand 6
A
460 461anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 439first strand
Strand 2
A
467 472anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il