Analysis of interatomic Contacts of Structural Units in PDB entry:
1OB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OB8 entry

There are 2 chains in PDB entry 1OB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6GLU 129
B
 ASP 4PRO 135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 1OB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 20Right-handed alpha
Helix 2
2
A
64 77Right-handed alpha
Helix 3
3
A
92 94Right-handed 310
Helix 4
4
A
117 129Right-handed alpha
Helix 5
5
B
6 20Right-handed alpha
Helix 6
6
B
64 76Right-handed alpha
Helix 7
7
B
117 130Right-handed alpha
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There are 4 sheets in PDB entry 1OB8. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
40 44anti-parallel
Strand 3
A
47 56anti-parallel
Strand 4
A
81 90parallel
Strand 5
A
95 99anti-parallel
Strand 6
A
115 116anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
107 110anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
40 44anti-parallel
Strand 3
B
47 56anti-parallel
Strand 4
B
81 90parallel
Strand 5
B
95 99anti-parallel
Strand 6
B
115 116anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
107 110anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il