Analysis of interatomic Contacts of Structural Units in PDB entry:
1OC0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OC0 entry

There are 2 chains in PDB entry 1OC0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6PRO 379
B
 GLU 3CYS 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 1OC0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 26Right-handed alpha
Helix 2
2
A
35 50Right-handed alpha
Helix 3
3
A
51 63Right-handed alpha
Helix 4
4
A
70 83Right-handed alpha
Helix 5
5
A
108 118Right-handed alpha
Helix 6
6
A
128 143Right-handed alpha
Helix 7
7
A
180 184Right-handed 310
Helix 8
8
A
229 231Right-handed 310
Helix 9
9
A
247 252Right-handed alpha
Helix 10
10
A
255 261Right-handed alpha
Helix 11
11
A
286 293Right-handed alpha
Helix 12
12
A
296 300Right-handed 310
Helix 13
13
B
24 29Right-handed 310
Helix 14
14
B
34 39Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1OC0. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
370 376anti-parallel
Strand 3
A
358 364anti-parallel
Strand 4
A
233 240anti-parallel
Strand 5
A
220 227anti-parallel
Strand 6
A
210 214anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
91 100parallel
Strand 3
A
163 172anti-parallel
Strand 4
A
319 328parallel
Strand 5
A
278 285anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 190first strand
Strand 2
A
196 208anti-parallel
Strand 3
A
269 276anti-parallel
Strand 4
A
351 353parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il