Analysis of interatomic Contacts of Structural Units in PDB entry:
1OCL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OCL entry

There are 2 chains in PDB entry 1OCL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 412
B
 MET 1LYS 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1OCL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 13Right-handed alpha
Helix 2
2
A
17 37Right-handed alpha
Helix 3
3
A
76 80Right-handed 310
Helix 4
4
A
88 97Right-handed alpha
Helix 5
5
A
108 112Right-handed 310
Helix 6
6
A
132 141Right-handed alpha
Helix 7
7
A
156 164Right-handed alpha
Helix 8
8
A
196 209Right-handed alpha
Helix 9
9
A
210 214Right-handed 310
Helix 10
10
A
229 233Right-handed 310
Helix 11
11
A
236 253Right-handed alpha
Helix 12
12
A
263 272Right-handed alpha
Helix 13
13
A
272 285Right-handed alpha
Helix 14
14
A
285 292Right-handed alpha
Helix 15
15
A
293 296Right-handed 310
Helix 16
16
A
297 306Right-handed alpha
Helix 17
17
A
311 333Right-handed alpha
Helix 18
18
A
351 354Right-handed 310
Helix 19
19
A
358 361Right-handed 310
Helix 20
20
A
362 369Right-handed alpha
Helix 21
21
A
395 411Right-handed alpha
Helix 22
22
B
3 13Right-handed alpha
Helix 23
23
B
17 37Right-handed alpha
Helix 24
24
B
76 80Right-handed 310
Helix 25
25
B
88 97Right-handed alpha
Helix 26
26
B
108 112Right-handed 310
Helix 27
27
B
132 141Right-handed alpha
Helix 28
28
B
156 164Right-handed alpha
Helix 29
29
B
196 209Right-handed alpha
Helix 30
30
B
210 214Right-handed 310
Helix 31
31
B
229 233Right-handed 310
Helix 32
32
B
236 252Right-handed alpha
Helix 33
33
B
263 292Right-handed alpha
Helix 34
34
B
293 296Right-handed 310
Helix 35
35
B
297 308Right-handed alpha
Helix 36
36
B
311 333Right-handed alpha
Helix 37
37
B
351 354Right-handed 310
Helix 38
38
B
362 369Right-handed alpha
Helix 39
39
B
395 412Right-handed alpha
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There are 2 sheets in PDB entry 1OCL. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
100 105anti-parallel
Strand 3
A
58 62parallel
Strand 4
A
146 151parallel
Strand 5
A
189 194anti-parallel
Strand 6
A
166 169anti-parallel
Strand 7
A
372 380anti-parallel
Strand 8
A
383 391anti-parallel
Strand 9
A
338 342anti-parallel
Strand 10
A
223 226parallel
Strand 11
A
256 259parallel
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There are 11 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 42first strand
Strand 2
B
100 105anti-parallel
Strand 3
B
58 62parallel
Strand 4
B
146 151parallel
Strand 5
B
189 194anti-parallel
Strand 6
B
166 169anti-parallel
Strand 7
B
372 380anti-parallel
Strand 8
B
383 391anti-parallel
Strand 9
B
338 342anti-parallel
Strand 10
B
223 226parallel
Strand 11
B
256 259parallel
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