Analysis of interatomic Contacts of Structural Units in PDB entry:
1OCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OCY entry

There is 1 chain in PDB entry 1OCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 330GLU 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 1OCY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
334 341Right-handed alpha
Helix 2
2
A
372 379Right-handed alpha
Helix 3
3
A
406 411Right-handed alpha
Helix 4
4
A
412 415Right-handed 310
Helix 5
5
A
492 496Right-handed 310
Helix 6
6
A
497 501Right-handed 310
Back to top of page

There is 1 sheet ( AA) in PDB entry 1OCY.

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 349first strand
Strand 2
A
520 524anti-parallel
Strand 3
A
359 361anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il