Analysis of interatomic Contacts of Structural Units in PDB entry:
1OD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OD2 entry

There are 2 chains in PDB entry 1OD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1484ARG 2203
B
 PRO 1495LYS 2190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 1OD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1489 1494Right-handed alpha
Helix 2
2
A
1494 1503Right-handed alpha
Helix 3
3
A
1507 1509Right-handed 310
Helix 4
4
A
1510 1525Right-handed alpha
Helix 5
5
A
1590 1595Right-handed 310
Helix 6
6
A
1597 1615Right-handed alpha
Helix 7
7
A
1635 1639Right-handed 310
Helix 8
8
A
1648 1651Right-handed 310
Helix 9
9
A
1659 1666Right-handed alpha
Helix 10
10
A
1667 1670Right-handed 310
Helix 11
11
A
1701 1719Right-handed alpha
Helix 12
12
A
1734 1743Right-handed alpha
Helix 13
13
A
1758 1766Right-handed alpha
Helix 14
14
A
1774 1779Right-handed alpha
Helix 15
15
A
1779 1784Right-handed alpha
Helix 16
16
A
1795 1808Right-handed alpha
Helix 17
17
A
1842 1848Right-handed alpha
Helix 18
18
A
1925 1942Right-handed alpha
Helix 19
19
A
1959 1965Right-handed alpha
Helix 20
20
A
1966 1981Right-handed alpha
Helix 21
21
A
1997 2002Right-handed alpha
Helix 22
22
A
2004 2009Right-handed 310
Helix 23
23
A
2026 2035Right-handed alpha
Helix 24
24
A
2036 2048Right-handed alpha
Helix 25
25
A
2048 2060Right-handed alpha
Helix 26
26
A
2064 2095Right-handed alpha
Helix 27
27
A
2099 2106Right-handed alpha
Helix 28
28
A
2114 2116Right-handed 310
Helix 29
29
A
2117 2139Right-handed alpha
Helix 30
30
A
2147 2157Right-handed alpha
Helix 31
31
A
2167 2178Right-handed alpha
Helix 32
32
A
2178 2194Right-handed alpha
Helix 33
33
A
2195 2200Right-handed alpha
Helix 34
34
B
1495 1504Right-handed alpha
Helix 35
35
B
1507 1509Right-handed 310
Helix 36
36
B
1510 1527Right-handed alpha
Helix 37
37
B
1533 1535Right-handed 310
Helix 38
38
B
1597 1615Right-handed alpha
Helix 39
39
B
1632 1636Right-handed 310
Helix 40
40
B
1648 1651Right-handed 310
Helix 41
41
B
1659 1669Right-handed alpha
Helix 42
42
B
1701 1720Right-handed alpha
Helix 43
43
B
1734 1743Right-handed alpha
Helix 44
44
B
1758 1766Right-handed alpha
Helix 45
45
B
1774 1779Right-handed alpha
Helix 46
46
B
1779 1784Right-handed alpha
Helix 47
47
B
1795 1808Right-handed alpha
Helix 48
48
B
1842 1849Right-handed alpha
Helix 49
49
B
1925 1942Right-handed alpha
Helix 50
50
B
1959 1965Right-handed alpha
Helix 51
51
B
1966 1981Right-handed alpha
Helix 52
52
B
1997 2002Right-handed alpha
Helix 53
53
B
2003 2009Right-handed 310
Helix 54
54
B
2026 2035Right-handed alpha
Helix 55
55
B
2036 2048Right-handed alpha
Helix 56
56
B
2048 2058Right-handed alpha
Helix 57
57
B
2064 2096Right-handed alpha
Helix 58
58
B
2099 2106Right-handed alpha
Helix 59
59
B
2114 2116Right-handed 310
Helix 60
60
B
2117 2141Right-handed alpha
Helix 61
61
B
2147 2157Right-handed alpha
Helix 62
62
B
2167 2177Right-handed alpha
Helix 63
63
B
2178 2188Right-handed alpha
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There are 16 sheets in PDB entry 1OD2. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, BH,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1550 1553first strand
Strand 2
A
1537 1544anti-parallel
Strand 3
A
1564 1573anti-parallel
Strand 4
A
1576 1587anti-parallel
Strand 5
A
1618 1622parallel
Strand 6
A
1724 1728parallel
Strand 7
A
1746 1749parallel
Strand 8
A
1791 1793parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1640 1643first strand
Strand 2
A
1653 1658anti-parallel
Strand 3
A
1688 1689anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1675 1676first strand
Strand 2
A
1692 1693anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1732 1733first strand
Strand 2
A
1754 1755parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1849 1852first strand
Strand 2
A
1855 1858anti-parallel
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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1867 1869first strand
Strand 2
A
1877 1884anti-parallel
Strand 3
A
1887 1894anti-parallel
Strand 4
A
1947 1949parallel
Strand 5
A
1985 1989parallel
Strand 6
A
2012 2017parallel
Strand 7
A
2111 2113parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1899 1903first strand
Strand 2
A
1915 1919anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1994 1996first strand
Strand 2
A
2021 2023parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1551 1553first strand
Strand 2
B
1537 1543anti-parallel
Strand 3
B
1564 1571anti-parallel
Strand 4
B
1580 1587anti-parallel
Strand 5
B
1618 1622parallel
Strand 6
B
1724 1728parallel
Strand 7
B
1745 1749parallel
Strand 8
B
1791 1793parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1595 1596first strand
Strand 2
B
1626 1627parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1639 1643first strand
Strand 2
B
1653 1658anti-parallel
Strand 3
B
1688 1693anti-parallel
Strand 4
B
1675 1678anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1732 1733first strand
Strand 2
B
1754 1755parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1850 1852first strand
Strand 2
B
1855 1857anti-parallel
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There are 7 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1867 1868first strand
Strand 2
B
1877 1884anti-parallel
Strand 3
B
1887 1894anti-parallel
Strand 4
B
1947 1949parallel
Strand 5
B
1985 1989parallel
Strand 6
B
2014 2017parallel
Strand 7
B
2112 2113parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1899 1903first strand
Strand 2
B
1915 1919anti-parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1994 1996first strand
Strand 2
B
2021 2023parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il