Analysis of interatomic Contacts of Structural Units in PDB entry:
1OD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OD4 entry

There are 3 chains in PDB entry 1OD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1480GLN 2196
B
 LEU 1480GLN 2196
C
 TRP 1492GLN 2196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 89 helices in PDB entry 1OD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1489 1494Right-handed alpha
Helix 2
2
A
1494 1503Right-handed alpha
Helix 3
3
A
1507 1509Right-handed 310
Helix 4
4
A
1510 1527Right-handed alpha
Helix 5
5
A
1533 1535Right-handed 310
Helix 6
6
A
1591 1595Right-handed 310
Helix 7
7
A
1597 1615Right-handed alpha
Helix 8
8
A
1632 1636Right-handed 310
Helix 9
9
A
1659 1669Right-handed alpha
Helix 10
10
A
1671 1673Right-handed 310
Helix 11
11
A
1701 1720Right-handed alpha
Helix 12
12
A
1734 1743Right-handed alpha
Helix 13
13
A
1758 1767Right-handed alpha
Helix 14
14
A
1773 1779Right-handed alpha
Helix 15
15
A
1779 1784Right-handed alpha
Helix 16
16
A
1795 1808Right-handed alpha
Helix 17
17
A
1842 1849Right-handed alpha
Helix 18
18
A
1925 1942Right-handed alpha
Helix 19
19
A
1959 1965Right-handed alpha
Helix 20
20
A
1966 1981Right-handed alpha
Helix 21
21
A
1997 2001Right-handed alpha
Helix 22
22
A
2002 2009Right-handed 310
Helix 23
23
A
2026 2035Right-handed alpha
Helix 24
24
A
2036 2046Right-handed alpha
Helix 25
25
A
2082 2096Right-handed alpha
Helix 26
26
A
2099 2106Right-handed alpha
Helix 27
27
A
2114 2116Right-handed 310
Helix 28
28
A
2117 2140Right-handed alpha
Helix 29
29
A
2147 2158Right-handed alpha
Helix 30
30
A
2167 2178Right-handed alpha
Helix 31
31
A
2178 2191Right-handed alpha
Helix 32
32
B
1489 1494Right-handed alpha
Helix 33
33
B
1494 1503Right-handed alpha
Helix 34
34
B
1507 1509Right-handed 310
Helix 35
35
B
1510 1528Right-handed alpha
Helix 36
36
B
1591 1595Right-handed 310
Helix 37
37
B
1597 1615Right-handed alpha
Helix 38
38
B
1632 1636Right-handed 310
Helix 39
39
B
1659 1670Right-handed alpha
Helix 40
40
B
1671 1673Right-handed 310
Helix 41
41
B
1701 1722Right-handed alpha
Helix 42
42
B
1734 1743Right-handed alpha
Helix 43
43
B
1758 1767Right-handed alpha
Helix 44
44
B
1773 1779Right-handed alpha
Helix 45
45
B
1779 1784Right-handed alpha
Helix 46
46
B
1795 1808Right-handed alpha
Helix 47
47
B
1842 1849Right-handed alpha
Helix 48
48
B
1925 1942Right-handed alpha
Helix 49
49
B
1959 1965Right-handed alpha
Helix 50
50
B
1966 1981Right-handed alpha
Helix 51
51
B
1997 2001Right-handed alpha
Helix 52
52
B
2004 2009Right-handed 310
Helix 53
53
B
2026 2035Right-handed alpha
Helix 54
54
B
2038 2047Right-handed alpha
Helix 55
55
B
2082 2096Right-handed alpha
Helix 56
56
B
2099 2106Right-handed alpha
Helix 57
57
B
2114 2141Right-handed alpha
Helix 58
58
B
2147 2157Right-handed alpha
Helix 59
59
B
2167 2178Right-handed alpha
Helix 60
60
B
2182 2189Right-handed alpha
Helix 61
61
B
2190 2192Right-handed 310
Helix 62
62
C
1493 1502Right-handed alpha
Helix 63
63
C
1507 1509Right-handed 310
Helix 64
64
C
1510 1527Right-handed alpha
Helix 65
65
C
1533 1535Right-handed 310
Helix 66
66
C
1591 1595Right-handed 310
Helix 67
67
C
1597 1615Right-handed alpha
Helix 68
68
C
1659 1670Right-handed alpha
Helix 69
69
C
1701 1720Right-handed alpha
Helix 70
70
C
1734 1743Right-handed alpha
Helix 71
71
C
1758 1767Right-handed alpha
Helix 72
72
C
1774 1779Right-handed alpha
Helix 73
73
C
1779 1787Right-handed alpha
Helix 74
74
C
1795 1807Right-handed alpha
Helix 75
75
C
1808 1810Right-handed 310
Helix 76
76
C
1842 1849Right-handed alpha
Helix 77
77
C
1925 1942Right-handed alpha
Helix 78
78
C
1959 1965Right-handed alpha
Helix 79
79
C
1966 1981Right-handed alpha
Helix 80
80
C
1997 2001Right-handed alpha
Helix 81
81
C
2002 2009Right-handed 310
Helix 82
82
C
2026 2035Right-handed alpha
Helix 83
83
C
2036 2045Right-handed alpha
Helix 84
84
C
2082 2096Right-handed alpha
Helix 85
85
C
2099 2106Right-handed alpha
Helix 86
86
C
2114 2141Right-handed alpha
Helix 87
87
C
2147 2157Right-handed alpha
Helix 88
88
C
2167 2177Right-handed alpha
Helix 89
89
C
2178 2191Right-handed alpha
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There are 22 sheets in PDB entry 1OD4. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, CA, CB, CC, CD, CE, CF, CG,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1550 1553first strand
Strand 2
A
1537 1544anti-parallel
Strand 3
A
1564 1571anti-parallel
Strand 4
A
1580 1587anti-parallel
Strand 5
A
1618 1622parallel
Strand 6
A
1724 1728parallel
Strand 7
A
1746 1749parallel
Strand 8
A
1791 1793parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1657 1658first strand
Strand 2
A
1688 1693anti-parallel
Strand 3
A
1675 1679anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1732 1733first strand
Strand 2
A
1754 1755parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1850 1852first strand
Strand 2
A
1855 1857anti-parallel
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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1867 1869first strand
Strand 2
A
1877 1884anti-parallel
Strand 3
A
1887 1894anti-parallel
Strand 4
A
1947 1949parallel
Strand 5
A
1985 1989parallel
Strand 6
A
2012 2017parallel
Strand 7
A
2111 2113parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1899 1903first strand
Strand 2
A
1915 1919anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1923 1924first strand
Strand 2
A
1955 1956parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1994 1996first strand
Strand 2
A
2021 2023parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1550 1553first strand
Strand 2
B
1537 1544anti-parallel
Strand 3
B
1564 1573anti-parallel
Strand 4
B
1576 1587anti-parallel
Strand 5
B
1618 1622parallel
Strand 6
B
1724 1728parallel
Strand 7
B
1746 1749parallel
Strand 8
B
1791 1793parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1640 1643first strand
Strand 2
B
1653 1658anti-parallel
Strand 3
B
1686 1693anti-parallel
Strand 4
B
1675 1681anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1732 1733first strand
Strand 2
B
1754 1755parallel
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There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1867 1869first strand
Strand 2
B
1877 1884anti-parallel
Strand 3
B
1887 1894anti-parallel
Strand 4
B
1947 1949parallel
Strand 5
B
1985 1989parallel
Strand 6
B
2012 2017parallel
Strand 7
B
2111 2113parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1899 1903first strand
Strand 2
B
1915 1919anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1923 1924first strand
Strand 2
B
1955 1956parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1994 1996first strand
Strand 2
B
2021 2023parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1550 1553first strand
Strand 2
C
1537 1544anti-parallel
Strand 3
C
1564 1571anti-parallel
Strand 4
C
1580 1587anti-parallel
Strand 5
C
1618 1622parallel
Strand 6
C
1724 1728parallel
Strand 7
C
1746 1749parallel
Strand 8
C
1791 1793parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1657 1658first strand
Strand 2
C
1687 1693anti-parallel
Strand 3
C
1675 1680anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1732 1733first strand
Strand 2
C
1754 1755parallel
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There are 7 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1867 1868first strand
Strand 2
C
1877 1884anti-parallel
Strand 3
C
1887 1894anti-parallel
Strand 4
C
1947 1949parallel
Strand 5
C
1985 1989parallel
Strand 6
C
2012 2017parallel
Strand 7
C
2111 2113parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1899 1903first strand
Strand 2
C
1915 1919anti-parallel
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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1923 1924first strand
Strand 2
C
1955 1956parallel
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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1994 1996first strand
Strand 2
C
2021 2023parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il