Analysis of interatomic Contacts of Structural Units in PDB entry:
1ODF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ODF entry

There is 1 chain in PDB entry 1ODF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5GLU 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1ODF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 25Right-handed alpha
Helix 2
2
A
43 60Right-handed alpha
Helix 3
3
A
61 63Right-handed 310
Helix 4
4
A
71 73Right-handed 310
Helix 5
5
A
76 87Right-handed alpha
Helix 6
6
A
90 94Right-handed 310
Helix 7
7
A
103 115Right-handed alpha
Helix 8
8
A
135 139Right-handed 310
Helix 9
9
A
181 196Right-handed alpha
Helix 10
10
A
215 233Right-handed alpha
Helix 11
11
A
237 247Right-handed alpha
Helix 12
12
A
248 263Right-handed alpha
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There are 3 sheets in PDB entry 1ODF. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
155 160parallel
Strand 3
A
32 37parallel
Strand 4
A
204 211parallel
Strand 5
A
269 275parallel
Strand 6
A
281 287anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
147 150anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
141 142anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il