Analysis of interatomic Contacts of Structural Units in PDB entry:
1ODJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1ODJ entry

There are 6 chains in PDB entry 1ODJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	VAL 235
B	SER 2	VAL 235
C	SER 2	VAL 235
D	SER 2	VAL 235
E	SER 2	VAL 235
F	SER 2	VAL 235

There are 49 helices in PDB entry 1ODJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	13	Right-handed 310
Helix 2	2	A	22	34	Right-handed alpha
Helix 3	3	A	42	46	Right-handed 310
Helix 4	4	A	66	80	Right-handed alpha
Helix 5	5	A	113	120	Right-handed alpha
Helix 6	6	A	130	144	Right-handed alpha
Helix 7	7	A	163	172	Right-handed alpha
Helix 8	8	A	181	193	Right-handed alpha
Helix 9	9	A	213	233	Right-handed alpha
Helix 10	10	B	22	33	Right-handed alpha
Helix 11	11	B	42	46	Right-handed 310
Helix 12	12	B	66	79	Right-handed alpha
Helix 13	13	B	113	120	Right-handed alpha
Helix 14	14	B	130	145	Right-handed alpha
Helix 15	15	B	163	172	Right-handed alpha
Helix 16	16	B	181	192	Right-handed alpha
Helix 17	17	B	213	235	Right-handed alpha
Helix 18	18	C	22	34	Right-handed alpha
Helix 19	19	C	42	46	Right-handed 310
Helix 20	20	C	66	81	Right-handed alpha
Helix 21	21	C	113	120	Right-handed alpha
Helix 22	22	C	130	145	Right-handed alpha
Helix 23	23	C	163	172	Right-handed alpha
Helix 24	24	C	181	192	Right-handed alpha
Helix 25	25	C	214	235	Right-handed alpha
Helix 26	26	D	22	34	Right-handed alpha
Helix 27	27	D	42	46	Right-handed 310
Helix 28	28	D	65	81	Right-handed alpha
Helix 29	29	D	113	121	Right-handed alpha
Helix 30	30	D	130	144	Right-handed alpha
Helix 31	31	D	163	172	Right-handed alpha
Helix 32	32	D	181	193	Right-handed alpha
Helix 33	33	D	213	233	Right-handed alpha
Helix 34	34	E	22	34	Right-handed alpha
Helix 35	35	E	42	46	Right-handed 310
Helix 36	36	E	66	79	Right-handed alpha
Helix 37	37	E	113	121	Right-handed alpha
Helix 38	38	E	130	145	Right-handed alpha
Helix 39	39	E	163	172	Right-handed alpha
Helix 40	40	E	181	192	Right-handed alpha
Helix 41	41	E	213	235	Right-handed alpha
Helix 42	42	F	22	34	Right-handed alpha
Helix 43	43	F	42	46	Right-handed 310
Helix 44	44	F	66	81	Right-handed alpha
Helix 45	45	F	113	121	Right-handed alpha
Helix 46	46	F	130	144	Right-handed alpha
Helix 47	47	F	163	172	Right-handed alpha
Helix 48	48	F	181	193	Right-handed alpha
Helix 49	49	F	213	235	Right-handed alpha

There are 6 sheets in PDB entry 1ODJ. Click on sheet of interest to get list of strands forming it: AA, BA, CA, DA, EA, FA,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	84	93	parallel
Strand 3	A	175	179	anti-parallel
Strand 4	A	148	156	parallel
Strand 5	A	103	112	parallel
Strand 6	A	195	205	anti-parallel
Strand 7	A	84	93	parallel
Strand 8	A	16	19	parallel
Strand 9	A	56	61	parallel
Strand 10	A	48	53	anti-parallel
Strand 11	A	16	19	first strand

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There are 11 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	20	first strand
Strand 2	B	84	93	parallel
Strand 3	B	175	179	anti-parallel
Strand 4	B	148	156	parallel
Strand 5	B	103	112	parallel
Strand 6	B	195	205	anti-parallel
Strand 7	B	84	93	parallel
Strand 8	B	16	20	parallel
Strand 9	B	56	61	parallel
Strand 10	B	48	53	anti-parallel
Strand 11	B	16	20	first strand

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There are 11 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	41	first strand
Strand 2	C	48	53	anti-parallel
Strand 3	C	56	61	anti-parallel
Strand 4	C	16	19	parallel
Strand 5	C	84	93	parallel
Strand 6	C	148	156	first strand
Strand 7	C	103	112	parallel
Strand 8	C	195	205	anti-parallel
Strand 9	C	84	93	parallel
Strand 10	C	177	178	anti-parallel
Strand 11	C	84	93	anti-parallel

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There are 16 strands in DA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	19	first strand
Strand 2	D	84	93	parallel
Strand 3	D	49	53	first strand
Strand 4	D	56	60	anti-parallel
Strand 5	D	56	60	first strand
Strand 6	D	16	19	parallel
Strand 7	D	84	93	parallel
Strand 8	D	16	19	parallel
Strand 9	D	103	112	first strand
Strand 10	D	148	156	parallel
Strand 11	D	148	156	first strand
Strand 12	D	103	112	parallel
Strand 13	D	175	179	first strand
Strand 14	D	84	93	parallel
Strand 15	D	195	205	parallel
Strand 16	D	84	93	parallel

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There are 18 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	84	93	parallel
Strand 3	E	35	41	first strand
Strand 4	E	48	53	anti-parallel
Strand 5	E	48	53	first strand
Strand 6	E	35	41	anti-parallel
Strand 7	E	56	61	first strand
Strand 8	E	16	18	parallel
Strand 9	E	84	93	parallel
Strand 10	E	16	18	parallel
Strand 11	E	103	112	first strand
Strand 12	E	148	156	parallel
Strand 13	E	148	156	first strand
Strand 14	E	103	112	parallel
Strand 15	E	175	179	first strand
Strand 16	E	84	93	anti-parallel
Strand 17	E	195	205	parallel
Strand 18	E	84	93	parallel

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There are 18 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	19	first strand
Strand 2	F	84	93	parallel
Strand 3	F	39	41	first strand
Strand 4	F	48	53	anti-parallel
Strand 5	F	48	53	first strand
Strand 6	F	39	41	anti-parallel
Strand 7	F	56	61	first strand
Strand 8	F	16	19	parallel
Strand 9	F	84	93	parallel
Strand 10	F	16	19	parallel
Strand 11	F	103	112	first strand
Strand 12	F	148	156	parallel
Strand 13	F	148	156	first strand
Strand 14	F	103	112	parallel
Strand 15	F	175	179	first strand
Strand 16	F	84	93	anti-parallel
Strand 17	F	195	205	parallel
Strand 18	F	84	93	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1ODJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
1ODJ