Analysis of interatomic Contacts of Structural Units in PDB entry:
1ODO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ODO entry

There is 1 chain in PDB entry 1ODO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7ALA 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1ODO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 26Right-handed alpha
Helix 2
2
A
45 53Right-handed alpha
Helix 3
3
A
61 66Right-handed alpha
Helix 4
4
A
68 73Right-handed alpha
Helix 5
5
A
79 84Right-handed alpha
Helix 6
6
A
86 90Right-handed 310
Helix 7
7
A
91 101Right-handed alpha
Helix 8
8
A
102 106Right-handed 310
Helix 9
9
A
107 132Right-handed alpha
Helix 10
10
A
140 144Right-handed alpha
Helix 11
11
A
146 158Right-handed alpha
Helix 12
12
A
160 164Right-handed 310
Helix 13
13
A
164 166Right-handed 310
Helix 14
14
A
167 176Right-handed alpha
Helix 15
15
A
180 205Right-handed alpha
Helix 16
16
A
209 219Right-handed alpha
Helix 17
17
A
228 245Right-handed alpha
Helix 18
18
A
246 261Right-handed alpha
Helix 19
19
A
261 270Right-handed alpha
Helix 20
20
A
274 286Right-handed alpha
Helix 21
21
A
318 323Right-handed alpha
Helix 22
22
A
356 375Right-handed alpha
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There are 3 sheets in PDB entry 1ODO. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
30 35parallel
Strand 3
A
38 43anti-parallel
Strand 4
A
314 317parallel
Strand 5
A
292 297anti-parallel
Strand 6
A
58 59anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
402 404anti-parallel
Strand 3
A
379 380anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 302first strand
Strand 2
A
308 309anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il