Analysis of interatomic Contacts of Structural Units in PDB entry:
1ODS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1ODS entry

There are 8 chains in PDB entry 1ODS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2	LYS 317
B	GLN 2	LYS 317
C	GLN 2	LYS 317
D	GLN 2	LYS 317
E	GLN 2	LYS 317
F	GLN 2	LYS 317
G	GLN 2	LYS 317
H	GLN 2	LYS 317

There are112 helices in PDB entry 1ODS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	7	12	Right-handed alpha
Helix 2	2	A	23	37	Right-handed alpha
Helix 3	3	A	64	66	Right-handed 310
Helix 4	4	A	95	97	Right-handed 310
Helix 5	5	A	98	108	Right-handed alpha
Helix 6	6	A	148	166	Right-handed alpha
Helix 7	7	A	181	194	Right-handed alpha
Helix 8	8	A	209	217	Right-handed alpha
Helix 9	9	A	222	232	Right-handed alpha
Helix 10	10	A	234	247	Right-handed alpha
Helix 11	11	A	249	254	Right-handed alpha
Helix 12	12	A	255	257	Right-handed 310
Helix 13	13	A	273	284	Right-handed alpha
Helix 14	14	A	301	317	Right-handed alpha
Helix 15	15	B	7	12	Right-handed alpha
Helix 16	16	B	23	37	Right-handed alpha
Helix 17	17	B	64	66	Right-handed 310
Helix 18	18	B	95	97	Right-handed 310
Helix 19	19	B	98	108	Right-handed alpha
Helix 20	20	B	148	166	Right-handed alpha
Helix 21	21	B	181	194	Right-handed alpha
Helix 22	22	B	209	217	Right-handed alpha
Helix 23	23	B	222	232	Right-handed alpha
Helix 24	24	B	234	247	Right-handed alpha
Helix 25	25	B	249	254	Right-handed alpha
Helix 26	26	B	255	257	Right-handed 310
Helix 27	27	B	273	283	Right-handed alpha
Helix 28	28	B	301	317	Right-handed alpha
Helix 29	29	C	7	14	Right-handed alpha
Helix 30	30	C	23	37	Right-handed alpha
Helix 31	31	C	64	66	Right-handed 310
Helix 32	32	C	95	97	Right-handed 310
Helix 33	33	C	98	108	Right-handed alpha
Helix 34	34	C	148	166	Right-handed alpha
Helix 35	35	C	181	194	Right-handed alpha
Helix 36	36	C	209	217	Right-handed alpha
Helix 37	37	C	222	232	Right-handed alpha
Helix 38	38	C	234	247	Right-handed alpha
Helix 39	39	C	249	254	Right-handed alpha
Helix 40	40	C	255	257	Right-handed 310
Helix 41	41	C	273	284	Right-handed alpha
Helix 42	42	C	301	317	Right-handed alpha
Helix 43	43	D	7	12	Right-handed alpha
Helix 44	44	D	23	38	Right-handed alpha
Helix 45	45	D	64	66	Right-handed 310
Helix 46	46	D	95	97	Right-handed 310
Helix 47	47	D	98	108	Right-handed alpha
Helix 48	48	D	148	166	Right-handed alpha
Helix 49	49	D	181	194	Right-handed alpha
Helix 50	50	D	209	217	Right-handed alpha
Helix 51	51	D	223	232	Right-handed alpha
Helix 52	52	D	234	247	Right-handed alpha
Helix 53	53	D	249	254	Right-handed alpha
Helix 54	54	D	255	257	Right-handed 310
Helix 55	55	D	273	283	Right-handed alpha
Helix 56	56	D	301	317	Right-handed alpha
Helix 57	57	E	7	12	Right-handed alpha
Helix 58	58	E	23	37	Right-handed alpha
Helix 59	59	E	64	66	Right-handed 310
Helix 60	60	E	95	97	Right-handed 310
Helix 61	61	E	98	108	Right-handed alpha
Helix 62	62	E	148	165	Right-handed alpha
Helix 63	63	E	181	194	Right-handed alpha
Helix 64	64	E	209	217	Right-handed alpha
Helix 65	65	E	222	232	Right-handed alpha
Helix 66	66	E	234	247	Right-handed alpha
Helix 67	67	E	249	254	Right-handed alpha
Helix 68	68	E	255	257	Right-handed 310
Helix 69	69	E	273	283	Right-handed alpha
Helix 70	70	E	301	317	Right-handed alpha
Helix 71	71	F	7	12	Right-handed alpha
Helix 72	72	F	23	37	Right-handed alpha
Helix 73	73	F	64	66	Right-handed 310
Helix 74	74	F	95	97	Right-handed 310
Helix 75	75	F	98	108	Right-handed alpha
Helix 76	76	F	148	166	Right-handed alpha
Helix 77	77	F	181	194	Right-handed alpha
Helix 78	78	F	209	217	Right-handed alpha
Helix 79	79	F	222	232	Right-handed alpha
Helix 80	80	F	234	247	Right-handed alpha
Helix 81	81	F	249	254	Right-handed alpha
Helix 82	82	F	255	257	Right-handed 310
Helix 83	83	F	273	284	Right-handed alpha
Helix 84	84	F	301	317	Right-handed alpha
Helix 85	85	G	7	12	Right-handed alpha
Helix 86	86	G	23	37	Right-handed alpha
Helix 87	87	G	64	66	Right-handed 310
Helix 88	88	G	95	97	Right-handed 310
Helix 89	89	G	98	108	Right-handed alpha
Helix 90	90	G	148	166	Right-handed alpha
Helix 91	91	G	181	194	Right-handed alpha
Helix 92	92	G	209	217	Right-handed alpha
Helix 93	93	G	222	232	Right-handed alpha
Helix 94	94	G	234	247	Right-handed alpha
Helix 95	95	G	249	254	Right-handed alpha
Helix 96	96	G	255	257	Right-handed 310
Helix 97	97	G	273	283	Right-handed alpha
Helix 98	98	G	301	317	Right-handed alpha
Helix 99	99	H	7	12	Right-handed alpha
Helix 100	100	H	23	37	Right-handed alpha
Helix 101	101	H	64	66	Right-handed 310
Helix 102	102	H	95	97	Right-handed 310
Helix 103	103	H	98	108	Right-handed alpha
Helix 104	104	H	148	166	Right-handed alpha
Helix 105	105	H	181	194	Right-handed alpha
Helix 106	106	H	209	217	Right-handed alpha
Helix 107	107	H	222	232	Right-handed alpha
Helix 108	108	H	234	247	Right-handed alpha
Helix 109	109	H	249	254	Right-handed alpha
Helix 110	110	H	255	257	Right-handed 310
Helix 111	111	H	273	284	Right-handed alpha
Helix 112	112	H	301	317	Right-handed alpha

There are 8 sheets in PDB entry 1ODS. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	54	63	anti-parallel
Strand 3	A	67	76	anti-parallel
Strand 4	A	111	115	anti-parallel
Strand 5	A	82	88	parallel
Strand 6	A	170	180	parallel
Strand 7	A	199	203	parallel
Strand 8	A	261	266	parallel
Strand 9	A	288	293	parallel

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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	54	63	anti-parallel
Strand 3	B	67	76	anti-parallel
Strand 4	B	111	115	anti-parallel
Strand 5	B	82	88	parallel
Strand 6	B	170	180	parallel
Strand 7	B	199	203	parallel
Strand 8	B	261	266	parallel
Strand 9	B	288	293	parallel

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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	47	first strand
Strand 2	C	54	62	anti-parallel
Strand 3	C	68	76	anti-parallel
Strand 4	C	111	115	anti-parallel
Strand 5	C	82	88	parallel
Strand 6	C	170	180	parallel
Strand 7	C	199	203	parallel
Strand 8	C	261	266	parallel
Strand 9	C	288	293	parallel

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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	47	first strand
Strand 2	D	54	62	anti-parallel
Strand 3	D	68	76	anti-parallel
Strand 4	D	111	115	anti-parallel
Strand 5	D	82	88	parallel
Strand 6	D	170	180	parallel
Strand 7	D	199	203	parallel
Strand 8	D	261	266	parallel
Strand 9	D	288	293	parallel

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There are 9 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	47	first strand
Strand 2	E	54	63	anti-parallel
Strand 3	E	67	76	anti-parallel
Strand 4	E	111	115	anti-parallel
Strand 5	E	82	88	parallel
Strand 6	E	170	180	parallel
Strand 7	E	199	203	parallel
Strand 8	E	261	266	parallel
Strand 9	E	288	293	parallel

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There are 9 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	47	first strand
Strand 2	F	54	62	anti-parallel
Strand 3	F	68	76	anti-parallel
Strand 4	F	111	115	anti-parallel
Strand 5	F	82	88	parallel
Strand 6	F	170	180	parallel
Strand 7	F	199	203	parallel
Strand 8	F	261	266	parallel
Strand 9	F	288	293	parallel

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There are 9 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	47	first strand
Strand 2	G	54	63	anti-parallel
Strand 3	G	67	76	anti-parallel
Strand 4	G	111	115	anti-parallel
Strand 5	G	82	88	parallel
Strand 6	G	170	180	parallel
Strand 7	G	199	203	parallel
Strand 8	G	261	266	parallel
Strand 9	G	288	293	parallel

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There are 9 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	47	first strand
Strand 2	H	54	63	anti-parallel
Strand 3	H	67	76	anti-parallel
Strand 4	H	111	115	anti-parallel
Strand 5	H	82	88	parallel
Strand 6	H	170	180	parallel
Strand 7	H	199	203	parallel
Strand 8	H	261	266	parallel
Strand 9	H	288	293	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1ODS

Analysis of interatomic Contacts of Structural Units in PDB entry:
1ODS