Analysis of interatomic Contacts of Structural Units in PDB entry:
1ODU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ODU entry

There are 2 chains in PDB entry 1ODU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7VAL 447
B
 ARG 7VAL 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1ODU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed alpha
Helix 2
2
A
21 28Right-handed alpha
Helix 3
3
A
36 40Right-handed 310
Helix 4
4
A
64 66Right-handed 310
Helix 5
5
A
67 74Right-handed alpha
Helix 6
6
A
77 87Right-handed alpha
Helix 7
7
A
92 94Right-handed 310
Helix 8
8
A
95 100Right-handed alpha
Helix 9
9
A
106 117Right-handed alpha
Helix 10
10
A
152 164Right-handed alpha
Helix 11
11
A
177 181Right-handed 310
Helix 12
12
A
187 193Right-handed 310
Helix 13
13
A
198 217Right-handed alpha
Helix 14
14
A
228 232Right-handed 310
Helix 15
15
A
233 246Right-handed alpha
Helix 16
16
A
303 317Right-handed alpha
Helix 17
17
A
334 352Right-handed alpha
Helix 18
18
A
353 355Right-handed 310
Helix 19
19
A
431 436Right-handed alpha
Helix 20
20
B
11 16Right-handed alpha
Helix 21
21
B
21 28Right-handed alpha
Helix 22
22
B
36 40Right-handed 310
Helix 23
23
B
64 66Right-handed 310
Helix 24
24
B
67 74Right-handed alpha
Helix 25
25
B
77 87Right-handed alpha
Helix 26
26
B
92 94Right-handed 310
Helix 27
27
B
95 100Right-handed alpha
Helix 28
28
B
106 118Right-handed alpha
Helix 29
29
B
152 164Right-handed alpha
Helix 30
30
B
177 181Right-handed 310
Helix 31
31
B
187 193Right-handed 310
Helix 32
32
B
198 217Right-handed alpha
Helix 33
33
B
228 232Right-handed 310
Helix 34
34
B
233 246Right-handed alpha
Helix 35
35
B
297 301Right-handed 310
Helix 36
36
B
303 317Right-handed alpha
Helix 37
37
B
339 352Right-handed alpha
Helix 38
38
B
353 355Right-handed 310
Helix 39
39
B
431 436Right-handed alpha
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There are 6 sheets in PDB entry 1ODU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
220 224parallel
Strand 3
A
167 173parallel
Strand 4
A
121 127parallel
Strand 5
A
29 34parallel
Strand 6
A
319 325parallel
Strand 7
A
279 286parallel
Strand 8
A
263 265parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 368first strand
Strand 2
A
372 379anti-parallel
Strand 3
A
382 387anti-parallel
Strand 4
A
442 447anti-parallel
Strand 5
A
407 410anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 398first strand
Strand 2
A
425 429anti-parallel
Strand 3
A
417 422anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 251first strand
Strand 2
B
220 224parallel
Strand 3
B
167 173parallel
Strand 4
B
121 127parallel
Strand 5
B
29 34parallel
Strand 6
B
319 325parallel
Strand 7
B
279 286parallel
Strand 8
B
263 265parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 368first strand
Strand 2
B
372 379anti-parallel
Strand 3
B
382 387anti-parallel
Strand 4
B
442 447anti-parallel
Strand 5
B
407 410anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 398first strand
Strand 2
B
425 429anti-parallel
Strand 3
B
417 422anti-parallel
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