Analysis of interatomic Contacts of Structural Units in PDB entry:
1OE4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OE4 entry

There are 5 chains in PDB entry 1OE4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 36THR 280
B
 GLU 36THR 280
E
 C 281 G 292
F
 C 293 T 298
F
 A 300 G 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1OE4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 55Right-handed alpha
Helix 2
2
A
67 72Right-handed alpha
Helix 3
3
A
72 84Right-handed alpha
Helix 4
4
A
101 106Right-handed alpha
Helix 5
5
A
111 118Right-handed alpha
Helix 6
6
A
138 142Right-handed 310
Helix 7
7
A
146 161Right-handed alpha
Helix 8
8
A
162 168Right-handed alpha
Helix 9
9
A
189 193Right-handed 310
Helix 10
10
A
194 217Right-handed alpha
Helix 11
11
A
225 239Right-handed alpha
Helix 12
12
A
255 259Right-handed 310
Helix 13
13
A
261 274Right-handed alpha
Helix 14
14
A
275 280Right-handed alpha
Helix 15
15
B
38 54Right-handed alpha
Helix 16
16
B
67 72Right-handed alpha
Helix 17
17
B
72 84Right-handed alpha
Helix 18
18
B
101 106Right-handed alpha
Helix 19
19
B
111 118Right-handed alpha
Helix 20
20
B
138 142Right-handed 310
Helix 21
21
B
146 161Right-handed alpha
Helix 22
22
B
162 168Right-handed alpha
Helix 23
23
B
189 193Right-handed 310
Helix 24
24
B
194 217Right-handed alpha
Helix 25
25
B
225 238Right-handed alpha
Helix 26
26
B
255 260Right-handed 310
Helix 27
27
B
261 274Right-handed alpha
Helix 28
28
B
275 280Right-handed alpha
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There are 4 sheets in PDB entry 1OE4. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
179 181anti-parallel
Strand 3
A
187 188anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
90 94parallel
Strand 3
A
220 224parallel
Strand 4
A
244 248parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
179 181anti-parallel
Strand 3
B
187 188anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 174first strand
Strand 2
B
90 94parallel
Strand 3
B
220 224parallel
Strand 4
B
244 248parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il