Analysis of interatomic Contacts of Structural Units in PDB entry:
1OED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OED entry

There are 5 chains in PDB entry 1OED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 211GLY 437
B
 PRO 217ASN 466
C
 PRO 225LYS 484
D
 PRO 211GLY 437
E
 PRO 219PHE 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1OED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
212 239Right-handed alpha
Helix 2
2
A
242 271Right-handed alpha
Helix 3
3
A
275 302Right-handed alpha
Helix 4
4
A
404 437Right-handed alpha
Helix 5
5
B
218 245Right-handed alpha
Helix 6
6
B
248 277Right-handed alpha
Helix 7
7
B
283 307Right-handed alpha
Helix 8
8
B
432 462Right-handed alpha
Helix 9
9
C
226 253Right-handed alpha
Helix 10
10
C
256 285Right-handed alpha
Helix 11
11
C
289 316Right-handed alpha
Helix 12
12
C
452 484Right-handed alpha
Helix 13
13
D
212 239Right-handed alpha
Helix 14
14
D
242 271Right-handed alpha
Helix 15
15
D
275 302Right-handed alpha
Helix 16
16
D
404 437Right-handed alpha
Helix 17
17
E
221 246Right-handed alpha
Helix 18
18
E
250 280Right-handed alpha
Helix 19
19
E
285 311Right-handed alpha
Helix 20
20
E
445 478Right-handed alpha
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There are no sheets in PDB entry 1OED
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il