Analysis of interatomic Contacts of Structural Units in PDB entry:
1OEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OEP entry

There is 1 chain in PDB entry 1OEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2SER 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 1OEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 60Right-handed 310
Helix 2
2
A
62 72Right-handed alpha
Helix 3
3
A
72 78Right-handed alpha
Helix 4
4
A
84 97Right-handed alpha
Helix 5
5
A
105 125Right-handed alpha
Helix 6
6
A
127 137Right-handed alpha
Helix 7
7
A
154 157Right-handed 310
Helix 8
8
A
175 199Right-handed alpha
Helix 9
9
A
200 203Right-handed 310
Helix 10
10
A
220 233Right-handed alpha
Helix 11
11
A
245 249Right-handed 310
Helix 12
12
A
274 285Right-handed alpha
Helix 13
13
A
298 307Right-handed alpha
Helix 14
14
A
324 335Right-handed alpha
Helix 15
15
A
343 348Right-handed alpha
Helix 16
16
A
349 363Right-handed alpha
Helix 17
17
A
379 389Right-handed alpha
Helix 18
18
A
400 418Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1OEP. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 12first strand
Strand 2
A
18 26anti-parallel
Strand 3
A
29 34anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
392 394parallel
Strand 3
A
366 370parallel
Strand 4
A
339 342parallel
Strand 5
A
314 317parallel
Strand 6
A
287 291parallel
Strand 7
A
239 243parallel
Strand 8
A
165 169anti-parallel
Strand 9
A
148 152anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il