Analysis of interatomic Contacts of Structural Units in PDB entry:
1OEW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OEW entry

There are 2 chains in PDB entry 1OEW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1VAL 53
A
 GLN 55LYS 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1OEW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 53Right-handed 310
Helix 2
2
A
59 63Right-handed 310
Helix 3
3
A
112 118Right-handed alpha
Helix 4
4
A
129 133Right-handed 310
Helix 5
5
A
142 148Right-handed alpha
Helix 6
6
A
227 236Right-handed alpha
Helix 7
7
A
273 277Right-handed alpha
Helix 8
8
A
305 310Right-handed alpha
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There are 4 sheets in PDB entry 1OEW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 77first strand
Strand 2
A
83 95anti-parallel
Strand 3
A
17 23anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 77first strand
Strand 2
A
83 95anti-parallel
Strand 3
A
98 111anti-parallel
Strand 4
A
41 43parallel
Strand 5
A
123 126anti-parallel
Strand 6
A
28 35parallel
Strand 7
A
17 23anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 272first strand
Strand 2
A
261 265anti-parallel
Strand 3
A
195 203anti-parallel
Strand 4
A
209 217anti-parallel
Strand 5
A
302 304parallel
Strand 6
A
224 226anti-parallel
Strand 7
A
293 295parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 244first strand
Strand 2
A
249 253anti-parallel
Strand 3
A
288 291anti-parallel
Strand 4
A
278 281anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il