Analysis of interatomic Contacts of Structural Units in PDB entry:
1OF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OF6 entry

There are 8 chains in PDB entry 1OF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 18ASN 368
B
 ALA 19ASN 368
C
 GLY 18LYS 369
D
 GLY 18ASN 368
E
 GLY 18ASN 368
F
 GLY 18ASN 368
G
 ALA 19VAL 367
H
 GLY 18VAL 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are106 helices in PDB entry 1OF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 41Right-handed alpha
Helix 2
2
A
44 63Right-handed alpha
Helix 3
3
A
80 99Right-handed alpha
Helix 4
4
A
133 150Right-handed alpha
Helix 5
5
A
163 168Right-handed 310
Helix 6
6
A
184 192Right-handed alpha
Helix 7
7
A
208 219Right-handed alpha
Helix 8
8
A
258 268Right-handed alpha
Helix 9
9
A
281 285Right-handed 310
Helix 10
10
A
288 290Right-handed 310
Helix 11
11
A
291 305Right-handed alpha
Helix 12
12
A
329 334Right-handed 310
Helix 13
13
A
346 368Right-handed alpha
Helix 14
14
B
33 41Right-handed alpha
Helix 15
15
B
44 63Right-handed alpha
Helix 16
16
B
80 98Right-handed alpha
Helix 17
17
B
133 151Right-handed alpha
Helix 18
18
B
163 168Right-handed 310
Helix 19
19
B
168 172Right-handed 310
Helix 20
20
B
184 192Right-handed alpha
Helix 21
21
B
208 219Right-handed alpha
Helix 22
22
B
258 269Right-handed alpha
Helix 23
23
B
281 286Right-handed 310
Helix 24
24
B
288 290Right-handed 310
Helix 25
25
B
291 305Right-handed alpha
Helix 26
26
B
346 368Right-handed alpha
Helix 27
27
C
33 41Right-handed alpha
Helix 28
28
C
44 63Right-handed alpha
Helix 29
29
C
80 99Right-handed alpha
Helix 30
30
C
120 125Right-handed alpha
Helix 31
31
C
133 150Right-handed alpha
Helix 32
32
C
163 168Right-handed 310
Helix 33
33
C
168 172Right-handed 310
Helix 34
34
C
184 193Right-handed alpha
Helix 35
35
C
208 219Right-handed alpha
Helix 36
36
C
258 269Right-handed alpha
Helix 37
37
C
281 285Right-handed 310
Helix 38
38
C
288 290Right-handed 310
Helix 39
39
C
291 305Right-handed alpha
Helix 40
40
C
330 334Right-handed 310
Helix 41
41
C
346 369Right-handed alpha
Helix 42
42
D
33 41Right-handed alpha
Helix 43
43
D
44 63Right-handed alpha
Helix 44
44
D
80 99Right-handed alpha
Helix 45
45
D
133 151Right-handed alpha
Helix 46
46
D
163 168Right-handed 310
Helix 47
47
D
168 170Right-handed 310
Helix 48
48
D
184 193Right-handed alpha
Helix 49
49
D
208 219Right-handed alpha
Helix 50
50
D
258 267Right-handed alpha
Helix 51
51
D
281 285Right-handed 310
Helix 52
52
D
288 290Right-handed 310
Helix 53
53
D
291 305Right-handed alpha
Helix 54
54
D
330 334Right-handed 310
Helix 55
55
D
346 368Right-handed alpha
Helix 56
56
E
33 41Right-handed alpha
Helix 57
57
E
44 63Right-handed alpha
Helix 58
58
E
80 99Right-handed alpha
Helix 59
59
E
133 150Right-handed alpha
Helix 60
60
E
164 169Right-handed alpha
Helix 61
61
E
184 192Right-handed alpha
Helix 62
62
E
208 219Right-handed alpha
Helix 63
63
E
258 267Right-handed alpha
Helix 64
64
E
288 290Right-handed 310
Helix 65
65
E
291 305Right-handed alpha
Helix 66
66
E
346 366Right-handed alpha
Helix 67
67
F
33 41Right-handed alpha
Helix 68
68
F
44 63Right-handed alpha
Helix 69
69
F
80 99Right-handed alpha
Helix 70
70
F
133 150Right-handed alpha
Helix 71
71
F
163 168Right-handed 310
Helix 72
72
F
168 172Right-handed 310
Helix 73
73
F
184 193Right-handed alpha
Helix 74
74
F
208 219Right-handed alpha
Helix 75
75
F
258 267Right-handed alpha
Helix 76
76
F
281 286Right-handed 310
Helix 77
77
F
288 290Right-handed 310
Helix 78
78
F
291 305Right-handed alpha
Helix 79
79
F
330 334Right-handed 310
Helix 80
80
F
346 368Right-handed alpha
Helix 81
81
G
33 41Right-handed alpha
Helix 82
82
G
44 63Right-handed alpha
Helix 83
83
G
80 99Right-handed alpha
Helix 84
84
G
120 125Right-handed alpha
Helix 85
85
G
133 150Right-handed alpha
Helix 86
86
G
163 168Right-handed 310
Helix 87
87
G
168 172Right-handed 310
Helix 88
88
G
184 192Right-handed alpha
Helix 89
89
G
208 219Right-handed alpha
Helix 90
90
G
258 268Right-handed alpha
Helix 91
91
G
284 286Right-handed 310
Helix 92
92
G
288 290Right-handed 310
Helix 93
93
G
291 305Right-handed alpha
Helix 94
94
G
346 367Right-handed alpha
Helix 95
95
H
33 41Right-handed alpha
Helix 96
96
H
44 63Right-handed alpha
Helix 97
97
H
80 99Right-handed alpha
Helix 98
98
H
133 151Right-handed alpha
Helix 99
99
H
163 168Right-handed 310
Helix 100
100
H
168 172Right-handed 310
Helix 101
101
H
184 192Right-handed alpha
Helix 102
102
H
208 219Right-handed alpha
Helix 103
103
H
258 267Right-handed alpha
Helix 104
104
H
281 285Right-handed 310
Helix 105
105
H
290 305Right-handed alpha
Helix 106
106
H
346 367Right-handed alpha
Back to top of page

There are 16 sheets in PDB entry 1OF6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, CA, CB, CC, DA, EA, EB, EC, FA, GA, GB, GC, HA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
B
233 238anti-parallel
Strand 3
B
223 227anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
102 107parallel
Strand 3
A
155 158parallel
Strand 4
A
172 177parallel
Strand 5
A
198 201parallel
Strand 6
A
244 248parallel
Strand 7
A
276 279parallel
Strand 8
A
310 316parallel
Strand 9
A
69 74parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 227first strand
Strand 2
A
233 238anti-parallel
Strand 3
B
25 29anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 74first strand
Strand 2
B
102 107parallel
Strand 3
B
155 158parallel
Strand 4
B
174 177parallel
Strand 5
B
198 201parallel
Strand 6
B
244 248parallel
Strand 7
B
276 279parallel
Strand 8
B
310 316parallel
Strand 9
B
69 74parallel
Back to list of sheets
Back to top of page

There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 29first strand
Strand 2
D
233 238anti-parallel
Strand 3
D
223 227anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 74first strand
Strand 2
C
102 107parallel
Strand 3
C
155 158parallel
Strand 4
C
174 177parallel
Strand 5
C
198 201parallel
Strand 6
C
244 248parallel
Strand 7
C
276 279parallel
Strand 8
C
310 316parallel
Strand 9
C
69 74parallel
Back to list of sheets
Back to top of page

There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 227first strand
Strand 2
C
233 238anti-parallel
Strand 3
D
25 29anti-parallel
Back to list of sheets
Back to top of page

There are 18 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 74first strand
Strand 2
D
102 107parallel
Strand 3
D
155 158parallel
Strand 4
D
172 177parallel
Strand 5
D
102 107first strand
Strand 6
D
69 74parallel
Strand 7
D
155 158first strand
Strand 8
D
102 107parallel
Strand 9
D
172 177first strand
Strand 10
D
155 158parallel
Strand 11
D
198 201first strand
Strand 12
D
172 177parallel
Strand 13
D
244 248first strand
Strand 14
D
198 201parallel
Strand 15
D
276 279first strand
Strand 16
D
244 248parallel
Strand 17
D
310 316first strand
Strand 18
D
69 74parallel
Back to list of sheets
Back to top of page

There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
25 30first strand
Strand 2
F
233 238anti-parallel
Strand 3
F
223 227anti-parallel
Back to list of sheets
Back to top of page

There are 16 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
69 74first strand
Strand 2
E
102 107parallel
Strand 3
E
102 107parallel
Strand 4
E
69 74parallel
Strand 5
E
155 158first strand
Strand 6
E
102 107parallel
Strand 7
E
172 177first strand
Strand 8
E
155 158parallel
Strand 9
E
198 201first strand
Strand 10
E
172 177parallel
Strand 11
E
244 250first strand
Strand 12
E
198 201parallel
Strand 13
E
276 283first strand
Strand 14
E
244 250parallel
Strand 15
E
310 316first strand
Strand 16
E
69 74parallel
Back to list of sheets
Back to top of page

There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
223 227first strand
Strand 2
E
233 238anti-parallel
Strand 3
F
25 29anti-parallel
Back to list of sheets
Back to top of page

There are 16 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
69 74first strand
Strand 2
F
102 107parallel
Strand 3
F
102 107parallel
Strand 4
F
69 74parallel
Strand 5
F
155 158first strand
Strand 6
F
102 107parallel
Strand 7
F
174 177first strand
Strand 8
F
155 158parallel
Strand 9
F
198 201first strand
Strand 10
F
174 177parallel
Strand 11
F
244 248first strand
Strand 12
F
198 201parallel
Strand 13
F
276 279first strand
Strand 14
F
244 248parallel
Strand 15
F
310 316first strand
Strand 16
F
69 74parallel
Back to list of sheets
Back to top of page

There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
25 29first strand
Strand 2
H
233 238anti-parallel
Strand 3
H
223 227anti-parallel
Back to list of sheets
Back to top of page

There are 16 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
69 74first strand
Strand 2
G
102 107parallel
Strand 3
G
102 107parallel
Strand 4
G
69 74parallel
Strand 5
G
155 158first strand
Strand 6
G
102 107parallel
Strand 7
G
174 177first strand
Strand 8
G
155 158parallel
Strand 9
G
198 201first strand
Strand 10
G
174 177parallel
Strand 11
G
244 250first strand
Strand 12
G
198 201parallel
Strand 13
G
276 283first strand
Strand 14
G
244 250parallel
Strand 15
G
310 316first strand
Strand 16
G
69 74parallel
Back to list of sheets
Back to top of page

There are 3 strands in GC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
223 227first strand
Strand 2
G
233 238anti-parallel
Strand 3
H
25 29anti-parallel
Back to list of sheets
Back to top of page

There are 16 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
69 74first strand
Strand 2
H
102 107parallel
Strand 3
H
102 107parallel
Strand 4
H
69 74parallel
Strand 5
H
155 158first strand
Strand 6
H
102 107parallel
Strand 7
H
174 177first strand
Strand 8
H
155 158parallel
Strand 9
H
198 201first strand
Strand 10
H
174 177parallel
Strand 11
H
244 248first strand
Strand 12
H
198 201parallel
Strand 13
H
276 279first strand
Strand 14
H
244 248parallel
Strand 15
H
310 316first strand
Strand 16
H
69 74parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il