Analysis of interatomic Contacts of Structural Units in PDB entry:
1OFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OFB entry

There are 2 chains in PDB entry 1OFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 21LYS 369
B
 ASP 22LYS 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1OFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 41Right-handed alpha
Helix 2
2
A
44 63Right-handed alpha
Helix 3
3
A
80 99Right-handed alpha
Helix 4
4
A
133 151Right-handed alpha
Helix 5
5
A
164 169Right-handed alpha
Helix 6
6
A
184 193Right-handed alpha
Helix 7
7
A
208 219Right-handed alpha
Helix 8
8
A
258 268Right-handed alpha
Helix 9
9
A
284 286Right-handed 310
Helix 10
10
A
288 290Right-handed 310
Helix 11
11
A
291 305Right-handed alpha
Helix 12
12
A
346 369Right-handed alpha
Helix 13
13
B
33 41Right-handed alpha
Helix 14
14
B
44 63Right-handed alpha
Helix 15
15
B
80 99Right-handed alpha
Helix 16
16
B
133 151Right-handed alpha
Helix 17
17
B
164 169Right-handed alpha
Helix 18
18
B
170 172Right-handed 310
Helix 19
19
B
184 193Right-handed alpha
Helix 20
20
B
208 219Right-handed alpha
Helix 21
21
B
258 268Right-handed alpha
Helix 22
22
B
281 286Right-handed 310
Helix 23
23
B
288 290Right-handed 310
Helix 24
24
B
291 305Right-handed alpha
Helix 25
25
B
346 369Right-handed alpha
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There are 4 sheets in PDB entry 1OFB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
B
233 238anti-parallel
Strand 3
B
223 227anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
102 107parallel
Strand 3
A
155 158parallel
Strand 4
A
172 177parallel
Strand 5
A
198 201parallel
Strand 6
A
244 250parallel
Strand 7
A
276 283parallel
Strand 8
A
310 316parallel
Strand 9
A
69 74parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 227first strand
Strand 2
A
233 238anti-parallel
Strand 3
B
25 29anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 74first strand
Strand 2
B
102 107parallel
Strand 3
B
155 158parallel
Strand 4
B
174 177parallel
Strand 5
B
198 201parallel
Strand 6
B
244 248parallel
Strand 7
B
276 279parallel
Strand 8
B
310 316parallel
Strand 9
B
69 74parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il